sigminer | scalable toolkit for genomic alteration signature | Genomics library

by ShixiangWang R Version: v2.2.1 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | sigminer Summary

sigminer is a R library typically used in Artificial Intelligence, Genomics applications. sigminer has no bugs, it has no vulnerabilities and it has low support. However sigminer has a Non-SPDX License. You can download it from GitHub.

The cancer genome is shaped by various mutational processes over its lifetime, stemming from exogenous and cell-intrinsic DNA damage, and error-prone DNA replication, leaving behind characteristic mutational spectra, termed mutational signatures. This package, sigminer, helps users to extract, analyze and visualize signatures from genome alteration records, thus providing new insight into cancer study. For pipeline tool, please see its co-evolutionary CLI sigflow.

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Quality

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Support

sigminer has a low active ecosystem.

It has 114 star(s) with 17 fork(s). There are 2 watchers for this library.

It had no major release in the last 12 months.

There are 5 open issues and 316 have been closed. On average issues are closed in 60 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of sigminer is v2.2.1

Quality

sigminer has no bugs reported.

Security

sigminer has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

sigminer has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

sigminer releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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sigminer Key Features

No Key Features are available at this moment for sigminer.

sigminer Examples and Code Snippets

No Code Snippets are available at this moment for sigminer.

Community Discussions

Trending Discussions on sigminer

Cannot use include_graphics to insert png in Rmarkdown (error: file is not in PNG format)

QUESTION

Cannot use include_graphics to insert png in Rmarkdown (error: file is not in PNG format)

Asked 2020-May-11 at 07:01

This error is very strange. When I knitr the doc, I got the following error:

...

ANSWER

Answered 2020-May-11 at 04:17

I think that the issue might be where your Rmd is located. The working directory automatically gets changed to that location when knitting. You could either change the root directory (Setting work directory in knitr using opts_chunk$set(root.dir = ...) doesn't work), or simply use paths that first go "up" to the main directory of your R project ("../figure.png").

Source https://stackoverflow.com/questions/61721837

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install sigminer

You can install the stable release of sigminer from CRAN with:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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