celda | Bayesian Hierarchical Modeling for Clustering Single Cell | Genomics library

 by   campbio R Version: v1.12.0 License: MIT

kandi X-RAY | celda Summary

kandi X-RAY | celda Summary

celda is a R library typically used in Artificial Intelligence, Genomics applications. celda has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

"celda" stands for "CEllular Latent Dirichlet Allocation". It is a suite of Bayesian hierarchical models and supporting functions to perform gene and cell clustering for count data generated by single cell RNA-seq platforms. This algorithm is an extension of the Latent Dirichlet Allocation (LDA) topic modeling framework that has been popular in text mining applications. This package also includes a method called DecontX which can be used to estimate and remove contamination in single cell genomic data.
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              celda has a low active ecosystem.
              It has 116 star(s) with 23 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 98 have been closed. On average issues are closed in 72 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of celda is v1.12.0

            kandi-Quality Quality

              celda has no bugs reported.

            kandi-Security Security

              celda has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              celda is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              celda releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            celda Key Features

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            celda Examples and Code Snippets

            No Code Snippets are available at this moment for celda.

            Community Discussions

            QUESTION

            Copy data from cells in sheet1 to different non-continuous columns in sheet2 with google apps script
            Asked 2021-May-26 at 05:47

            In a google spreadsheet document I have two sheets, one called BD Products and another called Add product.

            The first sheet (BD Products) is a table with all the information of the products (by rows). Some cells contain formulas to make calculations automatically. Other cells are empty fields that must be filled in by hand. To do this, I have created a form on the "Add product" sheet where there are those empty fields on the first sheet that are to be filled in manually.

            My intention is to send that data from the form of the "Add product" sheet to the "BD Products" sheet when clicking on the submit button. The problem is that these data must be copied in different non-continuous columns.

            To give you an example;

            SKU field of the Add product form is in cell D10, in the BD Products sheet the SKU field is in column E.

            CATEGORIA field of the Add product form is in cell H10, in the BD Products sheet the CATEGORIA field is in column D.

            NOMBRE PRODUCTO field of the Add Product form is in cell D12, in the BD Products sheet, the NOMBRE PRODUCTO field is in column C.

            PVP field of the Add product form is in cell E14, in the BD Products sheet the PVP field is in column Z.

            % DESPERDICIO field of the Add product form is in cell D19, in the BD Products sheet the % DESPERDICIO field is in column M.

            And so on continuously.

            As you can see, in the BD Products sheet there are columns in between that do not have fields to fill in in the form of the Add Product sheet because they are columns that contain formulas that make automatic calculations.

            In addition to that, I would like the form data of the "Add Product" sheet to be copied one row after the last occupied row of the BD Products sheet (which I do with the getLasRow () + 1).

            How can you do that? I don't think she's the only one in such a situation ...

            I've been looking for information on how to do it on YouTube, Google, and here on Stackoverflow, but I just can't find information about it.

            It is worth mentioning that I am a total novice and it is my first code.

            The code that I have done so far is the following:

            ...

            ANSWER

            Answered 2021-May-26 at 05:47

            I believe your goal as follows.

            • You want to modify your script to the simpler script.
            Pattern 1:

            In this pattern, Spreadsheet service (SpreadsheetApp) is used. At first, an object is prepared for copying the values, and the values are copied using the object in a loop.

            Modified script:

            Source https://stackoverflow.com/questions/67697802

            QUESTION

            How to replace pandas dataframe column names with another list or dictionary matching
            Asked 2021-May-17 at 13:34

            I need to replace column names of a pandas DataFrame having names like 'real_tag' and rename them like 'Descripcion'

            ...

            ANSWER

            Answered 2021-May-17 at 13:29

            You can use rename method of dataframe and pass dictionary (key as old name, value as new name) to the columns argument.

            given a dataframe df and your list of columns list:

            Source https://stackoverflow.com/questions/67570559

            QUESTION

            Web scraping with Beautiful Soup / find() function gets result = None
            Asked 2021-Apr-22 at 06:27

            I am trying to extract a value from a web page yet I'm unable to get the exact values in the find function of beautiful soup.

            Relevant part of the WP HTML code is the following:

            ...

            ANSWER

            Answered 2021-Apr-21 at 23:46

            You can use this example how to get data from this page:

            Source https://stackoverflow.com/questions/67204611

            QUESTION

            Data duplication after SwipeRefreshLayout
            Asked 2021-Jan-21 at 20:38

            I have added a SwipeRefreshLayout in my Activity to update the table in case of need, but I have had a problem that is the following. When I do the Swipe, for some reason the table is duplicated. This is my xml:

            ...

            ANSWER

            Answered 2021-Jan-21 at 18:42

            If I understood your problem correctly,

            You are calling this method twice listaPreciosPapa();. One from onCreate() & one from the callback of swipe refresh listener.

            And inside listaPreciosPapa, you are creating an instance of Tabla class where you are passing an instance of activity & TableLayout.

            Inside the constructor of the Tabla class, you are storing activity instance, TableLayout instance, and creating a new instance of filas list.

            Since Activity & TableLayout instance is same for both times when you initialize Table class.

            Source https://stackoverflow.com/questions/65833316

            QUESTION

            creating dynamic pdf with KnpSnappyBundle and branch
            Asked 2020-Dec-22 at 22:09

            I am creating a dynamic pdf which is a grid that shows notes by semesters, the problem is that if I have semesters I must create the pdf.

            Suppose there are 5 semesters or more, it only fits up to 4 semesters. I am using the pdf sheet horizontally.

            What I need is that somehow it only allows me to show 4 semesters on a sheet and the rest on another page, but loading the name column again, first name and lastname.

            ...

            ANSWER

            Answered 2020-Dec-22 at 22:09

            You can break page after 4th item like this.

            Source https://stackoverflow.com/questions/65415547

            QUESTION

            How to count the number of Cells Selected?
            Asked 2020-Oct-20 at 09:41

            I am trying to pass this macro to Javascript:

            ...

            ANSWER

            Answered 2020-Oct-20 at 09:41

            Finally I have the solution to this problem, to rude but it is working.

            Source https://stackoverflow.com/questions/64370971

            QUESTION

            Issue with AWS Kinesis SQL - Random Cut Forest algorithm
            Asked 2020-Oct-13 at 19:12

            I have this code in an AWS Kinesis application:

            ...

            ANSWER

            Answered 2020-Oct-13 at 19:12

            The solution is to define the variables as DOUBLE (or other accepted type), at the level of input schema: to define them as DOUBLE in SQL is not enough.

            I tried a JSON like this and worked:

            Source https://stackoverflow.com/questions/64316174

            QUESTION

            Duplicate objects in core data
            Asked 2020-Sep-06 at 16:19

            I have a problem, my objects every time I save them are reflected in uitableview in a duplicate way, does anyone know how to solve it or if I have a problem in my code?

            ...

            ANSWER

            Answered 2020-Sep-06 at 16:19

            The problem is that numberOfSections(in tableView:) always returns 4. However, you don't seem to group your data rows in any way. Therefore, the table view displays 4 sections without headers and because you aren't checking the section number in tableView(_ tableView:, cellForRowAt indexPath:), you get four identical cells in each section.

            Change 4 to 1 in numberOfSections(in tableView:) and the duplicates will go away.

            P.S. On a side note, you might want to use NSFetchedResultsController instead of just fetching items into an array, it couples really well with UITableViewDataSource.

            Source https://stackoverflow.com/questions/63750021

            QUESTION

            VBA excel, How to select files from a folder and apply code to all?
            Asked 2020-Aug-14 at 02:06

            In this code:

            1. How do I open a folder containing several files of the same structure and then apply the code automatically?.
            2. The code for 3 files is shown but it is required for all the files in the folder, how can I avoid copying the same thing?.
            3. Al correr el código demora en llenar cada celda

            Sub COPYCELL()

            ...

            ANSWER

            Answered 2020-Aug-14 at 02:06

            Please try this code. However, before you do I suggest you read all the comments and try to understand its logic. Good luck.

            Source https://stackoverflow.com/questions/63322070

            QUESTION

            How to trigger converter when ObservableCollection is changed in WPF using MVVM?
            Asked 2020-Jul-30 at 18:31

            I have two list like this:

            ...

            ANSWER

            Answered 2020-Jul-30 at 18:31

            Read all, it's more intuitive and explained than before.

            The code will be much easier if CeldaModel was aware of "I'm selected", letting you bind the checkbox to "Selected" boolean property.

            With that you can avoid the converter.

            But I think there is a better choice.

            You have "Resultados".

            Then in you ViewModel creates two more properties ICollectionView

            Source https://stackoverflow.com/questions/63178442

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install celda

            To install the latest stable release of celda from Bioconductor (requires R version >= 3.6):.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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