cmapR | Tools for manipulating annotated data matrices | Genomics library

by cmap R Version: Current License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | cmapR Summary

cmapR is a R library typically used in Artificial Intelligence, Genomics applications. cmapR has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Parsing and utility functions for analyzing CMap data. To learn more about the CMap project at the Broad Institute, please visit clue.io.

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Quality

Security

License

Reuse

Support

cmapR has a low active ecosystem.

It has 54 star(s) with 22 fork(s). There are 19 watchers for this library.

It had no major release in the last 6 months.

There are 7 open issues and 36 have been closed. On average issues are closed in 156 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of cmapR is current.

Quality

cmapR has 0 bugs and 0 code smells.

Security

cmapR has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cmapR code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cmapR is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cmapR releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

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cmapR Key Features

No Key Features are available at this moment for cmapR.

cmapR Examples and Code Snippets

No Code Snippets are available at this moment for cmapR.

Community Discussions

Trending Discussions on cmapR

Overleaped heatmap doesn't show correctly

QUESTION

Overleaped heatmap doesn't show correctly

Asked 2022-Jan-06 at 08:24

I have a heatmap plotted above an image (as shown on image link 1), with gaussian filter and normalize data. The main issue is that there is no value under 92 on the y axis, so the plot doesnt start on (0,0), instead start on (0,92). So, when I put together both pictures (heatmap and background image), there is an abrupt cut on the graph (as shown on 2nd link, where is the heatmap without background).

So, how can I extend the axis on the heatmap so it start on (0,0)?

Below is the code that I'm currently using to plot both images. Thanks!

...

ANSWER

Answered 2022-Jan-06 at 08:24

You could add rows to your heat map manually. Maybe easier is to try setting the histogram bins explicitly?

Source https://stackoverflow.com/questions/70601198

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cmapR

In R version 4.0 or newer:. Dependencies are listed in DESCRIPTION. A docker container with a slightly earlier version of cmapR can be obtained here: https://hub.docker.com/r/cmap/cmapr. This may be preferable for those who would like to use the package without installing on their system. Perhaps the simplest way to install directly from github is using devtools::install_github("cmap/cmapR"). Note that this requires having previously installed the devtools package. The script install_cmapR.R takes care of installing all the dependencies and then running devtools::install_github("cmap/cmapR"), so you can simply source this script after cloning this repository.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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