fgsea | Fast Gene Set Enrichment Analysis | Genomics library

by ctlab R Version: Current License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | fgsea Summary

fgsea is a R library typically used in Artificial Intelligence, Genomics applications. fgsea has no bugs, it has no vulnerabilities and it has low support. However fgsea has a Non-SPDX License. You can download it from GitHub.

fgsea is an R-package for fast preranked gene set enrichment analysis (GSEA). This package allows to quickly and accurately calculate arbitrarily low GSEA P-values for a collection of gene sets. P-value estimation is based on an adaptive multi-level split Monte-Carlo scheme. See the preprint for algorithmic details. Full vignette can be found here:

Support

Quality

Security

License

Reuse

Support

fgsea has a low active ecosystem.

It has 207 star(s) with 45 fork(s). There are 16 watchers for this library.

It had no major release in the last 6 months.

There are 11 open issues and 56 have been closed. On average issues are closed in 23 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of fgsea is current.

Quality

fgsea has 0 bugs and 0 code smells.

Security

fgsea has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

fgsea code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

fgsea has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

fgsea releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

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fgsea Key Features

No Key Features are available at this moment for fgsea.

fgsea Examples and Code Snippets

No Code Snippets are available at this moment for fgsea.

Community Discussions

Trending Discussions on fgsea

Cannot specify input dataset in shiny dashboard

How to return result in series from R function?

QUESTION

Cannot specify input dataset in shiny dashboard

Asked 2021-Aug-01 at 13:05

I am trying to make a shiny dashboard. I have two datasets, and based upon the selection of the datasets figures will be generate in the tab panels. However, by default only the last dataset that has been loaded/read is selected and I cannot select the first dataset. Even though I have made it default selection.

Below is my code.

...

ANSWER

Answered 2021-Aug-01 at 13:05

Assuming you have access to both datasets, you plot them both and display the selection. Try this

Source https://stackoverflow.com/questions/68606165

QUESTION

How to return result in series from R function?

Asked 2021-Jan-05 at 03:30

I am writing a 'rank' function to manipulate data in a dataframe. To do other manipulations, I need to split it to separate dataframes by 'cluster' variable.

I did it like this so far

...

ANSWER

Answered 2021-Jan-05 at 03:30

Try modifying your rank function as :

Source https://stackoverflow.com/questions/65572776

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install fgsea

fgsea is a part of R/Bioconductor and is availble on Linux, macOS and Windows platforms. For the installation instructions and more details please refer to https://bioconductor.org/packages/release/bioc/html/fgsea.html.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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