driveR | Prioritizing Cancer Driver Genes Using Genomics Data | Genomics library
kandi X-RAY | driveR Summary
kandi X-RAY | driveR Summary
Cancer genomes contain large numbers of somatic alterations but few genes drive tumor development. Identifying cancer driver genes is critical for precision oncology. Most of current approaches either identify driver genes based on mutational recurrence or using estimated scores predicting the functional consequences of mutations. driveR is a tool for personalized or batch analysis of genomics data for driver gene prioritization by combining genomics information and prior biological knowledge. As features, driveR uses coding impact metaprediction scores, non-coding impact scores, somatic copy number alteration scores, hotspot gene/double-hit gene condition, ‘phenolyzer’ gene scores and memberships to cancer-related KEGG pathways. It uses these features to estimate cancer-type-specific probabilities for each gene of being a cancer driver using the related task of a multi-task learning classification model. The method is described in detail in Ülgen E, Sezerman OU. driveR: a novel method for prioritizing cancer driver genes using somatic genomics data. BMC Bioinformatics. 2021 May 24;22(1):263.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of driveR
driveR Key Features
driveR Examples and Code Snippets
install.packages("driveR")
# install.packages("devtools")
devtools::install_github("egeulgen/driveR", build_vignettes = TRUE)
Community Discussions
Trending Discussions on driveR
QUESTION
I am having problems getting data from a element using Selenium with the line:
...ANSWER
Answered 2021-Jun-15 at 20:06When an element has spaces in the class
attribute, that means it has multiple classes, so you'll need to handle that another way.
One option is with CSS selectors.
https://selenium-python.readthedocs.io/locating-elements.html#locating-elements
https://selenium-python.readthedocs.io/api.html#locate-elements-by
QUESTION
First migration file:
ANSWER
Answered 2021-Jun-15 at 18:27change the posts migration post_id and author_id to this :
QUESTION
I've created a simple VBA interface to connect Excel to a MySQL DB. The VBA part acts as a preview of data for the user to choose what item he wants to import to the Excel sheet.
Until now I've work with a very complete set of data, but I got to a Table which (because of the nature of the items) some fields are NULL.
Now every time I try to check the values in the VBA I get the Run-time error 13 Type mismatch in the listview component. At first I though it was a field with DECIMAL typing, but after changing it to a DOUBLE (for testing) the problem persisted, and it was until I notice that if only checks columns with no NULL value, the problem disappears. Off course I can't omit this values.
I tried some .Tostring functions but with no success. And I failed to implement a IF to check for NULL in the obj.
This is my code:
...ANSWER
Answered 2021-Apr-13 at 10:28If you don't want to add a IsNull
-function in you SQL (as Nathan_Sav suggested as a comment): There is a IsNull
-function in VBA. With that, you can create a simple function that returns for example an empty string (or a 0 or whatever you prefer):
QUESTION
I'm trying to docerize my NodeJS API together with a MySQL image. Before the initial run, I want to run Sequelize migrations and seeds to have the tables up and ready to be served.
Here's my docker-compose.yaml
:
ANSWER
Answered 2021-Jun-15 at 15:38I solved my issue by using Docker Compose Wait. Essentially, it adds a wait loop that samples the DB container, and only when it's up, runs migrations and seeds the DB.
My next problem was: those seeds ran every time the container was run - I solved that by instead running a script that runs the seeds, and touch
s a semaphore file. If the file exists already, it skips the seeds.
QUESTION
In the below code i am getting error as no such element but when i try with out if condition its working fine
String currenturl= driver.getCurrentUrl(); String UK="gben",NZ="nzen",SE="sesv",AU="auen",NL="nlnl",NO="nonb",IE="ieen",DK="dkda",FI="fifi"; if (currenturl.contains("NL||NO||IE||DK||FI||SE")) { driver.findElement(By.cssSelector("#ss-nav-primary__item--menu-bbb-glasses > a")).click(); } else if(currenturl.contains("NZ||UK")) { driver.findElement(By.cssSelector("#ss-nav-primary__item--menu-glasses > a")).click(); } else { driver.findElement(By.cssSelector("#ss-nav-primary__item--menu-new-test > a")).click(); }
...ANSWER
Answered 2021-Jun-15 at 15:03Your condition is wrong.
Instead of
QUESTION
Weird case happening here. I am trying to insert some keys in a username and password input field. It was working just fine and suddenly it did stop.
Just to make thing clear for everyone. Once I click on login button, I get redirected to the login page where I have my username and password input fields. and their divs are as follow.
in my selenium code I target the username and password element by their name.
...ANSWER
Answered 2021-Jun-15 at 15:02I think you need ExplicitWait
:
try this :
QUESTION
I am attempting to add another checkbox to this program but for some reason it will not display when I run the program. Only the check box for the blue pill displays. I have attempted to add a couple things or change the way the program is structured, but nothing I have done so far has helped.
Code Below:
...ANSWER
Answered 2021-Jun-15 at 04:38When you're stuck on a problem, it never hurts to go back and consult the documentation.
You'll find information like this:
A border layout lays out a container, arranging and resizing its components to fit in five regions: north, south, east, west, and center. Each region may contain no more than one component, and is identified by a corresponding constant: NORTH, SOUTH, EAST, WEST, and CENTER. When adding a component to a container with a border layout, use one of these five constants...
When you add your button, you do this:
QUESTION
I have two grid setup's
Local grid setup (hub and nodes are running in my local machine) and my
local machine
connected tonetwork#1
VM grid setup (hub and nodes are running in my virtual machine) and my
virtual machine
connected tonetwork#2
When I execute the scripts I need to pass the IP address
as a parameter. Here,
I can run my scripts successfully in local machine(code is available in local machine) by passing the network#1
IP address
but if I pass the network#2
IP address
(VM IP address) to local machine
then I am getting below exception,
org.openqa.selenium.remote.UnreachableBrowserException: Could not start a new session. Possible causes are invalid address of the remote server or browser start-up failure.
As per my knowledge, hub and nodes should be connected to same network. Cannot we run the scripts by passing the VM IP address to local machine?
Trace:
...ANSWER
Answered 2021-Jun-15 at 13:57Yes, the exception occurred due to firewall. The ping test
is successful from local machine to VM but not from VM to local. I contacted the organization network administrator to confirmed this.
QUESTION
I just install Laravel passport as follow:
Admin Model:
...ANSWER
Answered 2021-Jun-15 at 13:13The issue with default guard. So it should be web
QUESTION
ANSWER
Answered 2021-Jun-15 at 13:10class=OTSigninButton
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