AMARETTO | Regulatory network inference and driver gene evaluation | Genomics library

 by   gevaertlab R Version: Current License: Apache-2.0

kandi X-RAY | AMARETTO Summary

kandi X-RAY | AMARETTO Summary

AMARETTO is a R library typically used in Artificial Intelligence, Genomics applications. AMARETTO has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

This repository contains the code accompanying the manuscript "Module analysis captures pancancer genetically and epigenetically deregulated cancer driver genes for smoking and antiviral response". We have developed an algorithm called AMARETTO to identify pancancer driver genes. AMARETTO integrates pancancer DNA copy number, DNA methylation, and gene expression data into modules to identify pancancer driver genes. AMARETTO supports downloading and processing TCGA data from Firehose.
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              AMARETTO has a low active ecosystem.
              It has 10 star(s) with 10 fork(s). There are 10 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 2 open issues and 3 have been closed. On average issues are closed in 63 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of AMARETTO is current.

            kandi-Quality Quality

              AMARETTO has no bugs reported.

            kandi-Security Security

              AMARETTO has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              AMARETTO is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              AMARETTO releases are not available. You will need to build from source code and install.
              Installation instructions, examples and code snippets are available.

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            AMARETTO Key Features

            No Key Features are available at this moment for AMARETTO.

            AMARETTO Examples and Code Snippets

            No Code Snippets are available at this moment for AMARETTO.

            Community Discussions

            QUESTION

            How to find number of unique values per a key in python dictionary
            Asked 2020-May-26 at 10:07

            I have a dictionary as,

            ...

            ANSWER

            Answered 2020-May-26 at 09:15

            You can try something like this:

            Source https://stackoverflow.com/questions/62018455

            QUESTION

            Amazon Lex with Amazon Lambda Help for Ice Cream Shop
            Asked 2020-May-16 at 15:20

            Based on a Date, I want Amazon Lex to respond with a flavor(s). It is for my ice cream shop. I am using this as part of my Amazon Connect system, whereas someone asks, "What is todays flavor" and Amazon Lex says, "Today's flavor is Mint Chip" for example.

            I have a slot in Amazon Lex called "date".

            I am working on a Lambda Function and receiving the error, "An error has occurred: Invalid Lambda Response: Received error response from Lambda: Unhandled". I know it is my sloppy Lambda function below that is causing this.

            Here is the .js that I am using in Lambda:

            ...

            ANSWER

            Answered 2020-May-16 at 15:20

            Please try this solution to return todays flavour from the list of flavours added sequentially according to the day of the month. Current intent name needs to be changed on the lex dashboard. I have not used any slots, but they can be easily added to a new flow, for eg.

            1. What are the flavours available ? - intent becomes FetchFlavour
            2. What is todays/tomorrows/end of months/etc. flavour ?- slot can be an amazon date which needs validation on the lambda handler

            Hope this is the direction that you were looking for.

            Source https://stackoverflow.com/questions/61613476

            QUESTION

            Why is my parallel array displaying random values?
            Asked 2020-Feb-28 at 20:04

            I am supposed to use a parallel array to show how much a cup of coffee is based on what add-in is added. The original cup of coffee is 2 dollars. I am mostly confused with how to output the correct results. Currently, it will output saying "Order total is2". What am I missing?

            ...

            ANSWER

            Answered 2020-Feb-28 at 20:04

            QUESTION

            How to capture float values from user input to get sum of float values
            Asked 2019-Oct-08 at 20:30

            The assignment is:

            1. Write the code that searches the list for the name of the add-in ordered by the customer.
            2. Write the code that prints the name and price of the add-in or the error message, and then write the code that prints the cost of the total order.
            3. Execute the program using the following data and verify that the output is correct:

              ...

            ANSWER

            Answered 2019-Oct-02 at 21:06

            Instead of addcost of being variable it should be list. extend operator works only with list.

            Source https://stackoverflow.com/questions/58209213

            QUESTION

            VBA for-loop adding blank dictionary entries
            Asked 2019-Apr-05 at 06:09

            I'm trying to replace some values in an Excel worksheet by using a VBA dictionary. When I did this last year, it worked perfectly. Upon trying it again it is adding blank values to duplicate keys, and not writing anything to the cells as a result.

            I've tried both early binding and late binding with no success.

            Here is the code with late binding.

            ...

            ANSWER

            Answered 2019-Apr-05 at 06:09

            Dictionaries actually use variants for keys rather than strictly strings or numbers, which is why when looping through keys you have to define k as a variant. A key can actually be anything.

            Also, dictionaries add new keys spontaneously if you refer to a key that isn't already defined, which is why you have to use the safe function Exists to test whether a key has been defined.

            VBA, being the undisciplined beast that it is, tries to be helpful in determining what you want when you refer to a Range() object in code. If a range object can be used, then it will use the range object. If a string/number is expected, then it will use the value of the Range() object instead (being the default property).

            Because dictionaries can take any object as a key, rather than using the value in Cells(i, 4), it uses the actual range object of Cells(i, 4) and creates a new key with no value. You can see this in the Locals windows, which shows the sub-types of the variant dictionary keys:

            When you debug.print keys at the end, the print function expects a string/number. So when it reaches the "duplicate" keys, which are actually range objects, it instead prints the value of the range object.

            In stepping through the code, you can actually get any range properties of those keys in the immediate window instead! For example: ?k.Address

            To fix your code, you just need to explicitly refer to the value of the cell:

            Source https://stackoverflow.com/questions/55528021

            QUESTION

            Flexbox grid align images center
            Asked 2018-Oct-28 at 15:43

            I want to align the images and text in the centre using flexbox

            The image side by side and the text below the images

            It was working before, however all of a sudden the images are just placed on the left hand side.

            I have tried re-writing the HTML & CSS code however I am still getting the same output

            I have no idea why it suddenly changed.

            ...

            ANSWER

            Answered 2018-Oct-28 at 15:18

            In basic raw terms this is how its done with css.

            Source https://stackoverflow.com/questions/53032904

            QUESTION

            header image and fixed navbar
            Asked 2018-Feb-15 at 13:50

            I want to make a page that first displays a video, then under the video, I want a navbar, but when I scroll down I want the navbar to be fixed.

            also, I would really like to only use CSS, no JavaScript and definitely no jQuery

            This is what i have:

            ...

            ANSWER

            Answered 2018-Feb-15 at 13:39

            QUESTION

            Parallel Array for a Java project
            Asked 2017-Nov-10 at 07:30

            I have searched to see if there was a question like this already but I did not find one. So for this school project, I am supposed to make a program with arrays to look up and print the names and prices for coffee orders. I have most of the program done but I only get one dialog box to pop up and if I add an XXX it quits the system completely without giving an output. I know if I add some more addIn = JOptionPane.showInputDialog("Enter coffee add-in or XXX to quit: "); it would give me another pop-up window but I am still having trouble with it has I want it to give me one line at a time like if I say "Cream" it says "Cream price is $0.89" and if I enter "Vanilla" it says "Sorry we do not carry that" and when I enter "XXX" it would just says "Order total is $2.89".

            ...

            ANSWER

            Answered 2017-Nov-10 at 04:38

            but I only get one dialog box to pop up and if I add an XXX it quits the system completely without giving an output

            You need some kind of loop, maybe something like...

            Source https://stackoverflow.com/questions/47215661

            QUESTION

            Problems when validating XML and DTD
            Asked 2017-Jan-23 at 05:01

            I have made this list of recipes, but for some reason I get a ton of error messages when I try to validate the documents in Oxygen XML Editor. Oxygen gives me the following errors:

            element type "ingredients" must not be declared more than once element type "name" must not be declared more than once element type "quantity" must not be declared more than once unexpected element "ingredients". The content of the parent element must match: (name+, ingredients+, quantity+, decoration, instructions, neccessity, preparation)

            Here is my code:

            ...

            ANSWER

            Answered 2017-Jan-23 at 05:01

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install AMARETTO

            Install from the GitHub repository using devtools:.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/gevaertlab/AMARETTO.git

          • CLI

            gh repo clone gevaertlab/AMARETTO

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            git@github.com:gevaertlab/AMARETTO.git

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