idep | Integrated Differential Expression and Pathway analysis | Genomics library
kandi X-RAY | idep Summary
kandi X-RAY | idep Summary
Integrated Differential Expression and Pathway analysis
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of idep
idep Key Features
idep Examples and Code Snippets
Community Discussions
Trending Discussions on idep
QUESTION
I've been using CMake to build my next C++ project, and I had to link a library named 'GLFW' to my executable. I've been having strange issues with this:
Here is my project structure
GLFW is cloned into the 'dep' directory. The 'build' directory is my CMake build directory. The 'src' directory is a subdirectory to my top-level CMakeLists.txt and contains the source code.
Top-level CMakeLists.txt:
...ANSWER
Answered 2021-May-28 at 13:28Your project is fine. You just happened to run into a bug within glfw: https://github.com/glfw/glfw/issues/1807
It's been fixed already, but not released yet. So your best options are to clone the master branch, or to manually apply whichever fix resolved the issue in your version of the source until 3.3.5 gets released.
QUESTION
I am completely new to D3 and trying to solve the following scenario. I got several context related nodes in place. All of them are displayed fine as I want to, further I want to add an HTML selector button which changes the colour and opacity of all nodes, which are not selected.
The Goal is to highlight the selection by changing the non selected nodes colour and opacity. I do not want completely remove them as done here because some nodes are will be member of more than one context in future.
I thought the swarm intelligence of our community might got an idea. Thanks in advance.
...ANSWER
Answered 2020-Dec-10 at 15:57You'll want the select menu to have values representing each kontext:
QUESTION
The code below worked in DryIoc 2.x. I just updated to 4.x. The code no longer works (see the exception below). It appears that 4.x treats the "ScopedTo" data as non-exclusive, whereas in 2.x they were exclusive to the scope -- they weren't available to other scopes out of the box. How do I get the 2.x behavior now? The exception lists several remedies, but which remedy matches the 2.x behavior?
...ANSWER
Answered 2020-Jul-14 at 13:30Seems like a bug. I have created the respective issue in DryIoc repository https://github.com/dadhi/DryIoc/issues/290. Please move the discussion there.
The issue will appear only with Reuse.Singleton
parent services. So until the issue is fixed, the workaround may be to change Owner
reuse or to insert artificial scope to play the role of a singleton for those services.
DryIoc v4.2.4 with the fix is out on NuGet https://github.com/dadhi/DryIoc/releases/tag/v4.2.4
QUESTION
I have searched all over the web and especially have gone through all the questions regarding this here on Stackoverflow.
I am using the following command to install it "pip install pocketsphinx"
I have windows x64, I have not set any environmental paths regarding Swig.
Also I've downloaded Swig zip file and extracted it into my downloads folder, searched through it and there is no "swig.exe" file.
Below you can see the error/log from the command prompt.
...ANSWER
Answered 2018-Jan-14 at 12:08Alright, I solved it. Here’s how:
First I went to their official website and downloaded the swigwin file specifically for windows with a “swig.exe” file.
Then I extracted it, and added it to the environment variable PATH. This solved my problem.
Afterwards I got another error, it couldn’t find visual studio C++ build tools v14.0 (along these lines), if you have this problem too just, download the C++ build tools 2015 from their official website, install, then find it in your Program Files or what ever, copy the path to the VC folder and add it to your environment variable PATH as well.
This allowed me to download/install pocketsphinx on windows.
QUESTION
I am working on a speech recognition software and wanted to test out pocketsphinx and have tried to install it using pip on windows 10 python version 3.8 and it wont download usually i would fix the problem by downloading it as binary file and then trying to install it but it tells me that the whl file is unsupported and thank you all in advance.
Down below is the error message I got.
...ANSWER
Answered 2019-Oct-30 at 15:42ERROR: pocketsphinx-0.1.15-cp36-cp36m-win32.whl is not a supported wheel on this platform
You're trying to install a wheel for Python 3.6 to Python 3.8. That doesn't work.
The latest release of pocketsphinx was released at Jun 4, 2018, more than a year ago. Python 3.8 didn't exist at that time so they don't provide wheels for it.
Actually they don't even have wheels for Python 3.7. Either you have to use Python 3.6 or compile the project from sources. To compile from sources you need a number of prerequisites.
The error
error: command 'swig.exe' failed: No such file or directory
means that you miss one of the prerequisites — SWIG.
QUESTION
I'm using C++ SDL2 and trying to load 3 .cpp
files as well as 2 .h
files.
I got this error message:
...ANSWER
Answered 2020-Mar-04 at 11:21Solved! -lmingw32 had to be removed, answers the multiple definition of `main' error as well
EDIT: using VS 2019 command prompt
QUESTION
I'm getting something like this. Can anyone please tell me how to fix this.
...ANSWER
Answered 2017-Jun-12 at 19:23You try to install pocketsphinx
with pip
, that will download and compile this module. It requires some compiling tool like swig
.
Another solution is to install a binary version of pocketsphinx
. You can download a binary version here. You have to select the correct version with respect to your installation.
To determine which one you have to download, you can run the following commands, that will tell you which version you require and whether you run a 32 or 64 bit python interpreter.
QUESTION
I am using this theme material design https://gurayyarar.github.io/AdminBSBMaterialDesign/ to create a codeigniter application and I have a problem with the dropdown because it changes the code from this :
...ANSWER
Answered 2019-Oct-24 at 11:05It is because theme material design includes custom select code for that. If you don't want it then remove custom select code. For custom select code like this or it's targeted on class(form-control show-tic).
QUESTION
I couldn't install textract
in google colab, error message showing as below.
some people suggest to use sudo apt-get install libasound2-dev
but how to do sudo...
in google colab?
=== error message ==========================================================
Failed building wheel for pocketsphinx Running setup.py clean for pocketsphinx Failed to build pocketsphinx Installing collected packages: pocketsphinx Running setup.py install for pocketsphinx ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-install-03c_ysbm/pocketsphinx/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-record-6n9ewg9i/install-record.txt --single-version-externally-managed --compile: running install running build_ext building 'sphinxbase._sphinxbase' extension swigging deps/sphinxbase/swig/sphinxbase.i to deps/sphinxbase/swig/sphinxbase_wrap.c swig -python -modern -threads -Ideps/sphinxbase/include -Ideps/sphinxbase/include/sphinxbase -Ideps/sphinxbase/include/android -Ideps/sphinxbase/swig -outdir sphinxbase -o deps/sphinxbase/swig/sphinxbase_wrap.c deps/sphinxbase/swig/sphinxbase.i unable to execute 'swig': No such file or directory error: command 'swig' failed with exit status 1
=========================================================================== Thank you, Ling
...ANSWER
Answered 2019-Jan-10 at 06:26In google colab Bash commands run by prefixing the command with ‘!’.
Example:
QUESTION
I know about this question: macOS 'wchar.h' File Not Found but it did not help me. I've tried reinstalling xcode, reinstalling command line tools, restarting the system. wchar.h file is in place, but the compiler does not manage to find it. What else could I try? Maybe it is sysroot related? Any way to fix that?
...ANSWER
Answered 2017-Sep-21 at 16:41It was caused by incorrect sysroot, (set for an older mac os version) set in makefiles.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install idep
Cloud computing providers such as Amazon AWS provides temporary servers that can be used inexpensively, especially the spot instances. See this video for some step-by-step screen-shot. The setup.sh script was tested only on Ubuntu. Wait until the script shows 'iDEP docker images and databases are ready!'. Now the server is running with 10 containers to serve many concurrent users. You should be able to use iDEP from a web browser with http://12.12.12.12/idep94/, where 12.12.12.12 is the IP address of the server. ShinyGO can used via http://12.12.12.12/go74/. The server's port 80 should be available and exposed. A user has contributed scripts to install a standalone version using Singularity. Following the instruction in this folder.
More than 250GB available storage
More than 4GB memory
A Linux system with port 80 open for web access.
Install Git, if it is not available. For Ubuntu:
Install Docker
Install Docker-compose
Copy iDEP source code from GitHub. Here we are installing iDEP in the home directory; change to other folder if desired.
Download docker images from DockHub, and download database file from our FTP server. It can take as much as 2 hours, as the script downloads and unzips large files. Once finished total storage usage is about 161GB!
Start the Shiny server with Docker-compose from the idep folder.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page