MSnbase | Base Classes and Functions for Mass Spectrometry and Proteomics | Genomics library

by lgatto R Version: Current License: No License

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kandi X-RAY | MSnbase Summary

MSnbase is a R library typically used in Artificial Intelligence, Genomics applications. MSnbase has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Base Classes and Functions for Mass Spectrometry and Proteomics

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Quality

Security

License

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Support

MSnbase has a low active ecosystem.

It has 104 star(s) with 49 fork(s). There are 13 watchers for this library.

It had no major release in the last 6 months.

There are 26 open issues and 402 have been closed. On average issues are closed in 11 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of MSnbase is current.

Quality

MSnbase has no bugs reported.

Security

MSnbase has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

MSnbase does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

MSnbase releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

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MSnbase Key Features

No Key Features are available at this moment for MSnbase.

MSnbase Examples and Code Snippets

No Code Snippets are available at this moment for MSnbase.

Community Discussions

Trending Discussions on MSnbase

Proteomics: Create a MSnSet class file with MSnbase

QUESTION

Proteomics: Create a MSnSet class file with MSnbase

Asked 2018-Jun-03 at 09:50

I want to create a MSset file (proteomics data, data corresponds to spectral counts) but I get error messages and I am stuck (after reading manuals, helps, forums, etc).

You can get my files here: https://www.dropbox.com/sh/dw7zfgiku6cteba/AADP3U2yxB5LgXy5ykJYFf0ga?dl=0

Here is the code I have tried:

...

ANSWER

Answered 2018-May-30 at 12:27

From the argument name and from the help page, phenoDataFile should be the path to the file, not the contents of the file. From your question, I would guess the argument should be phenoDataFile = "~/Desktop/analyse/pheno.txt"

Source https://stackoverflow.com/questions/50590728

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install MSnbase

To install the package:. If you need the github version (not recommended unless you know what you are doing), use.

Support

General questions should be asked on the Bioconductor support forum, using MSnbase to tag the question. Feel also free to open a GitHub issue, in particular for bug reports.

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