escape | Easy single cell analysis platform for enrichment | Genomics library

 by   ncborcherding R Version: Current License: No License

kandi X-RAY | escape Summary

kandi X-RAY | escape Summary

escape is a R library typically used in Artificial Intelligence, Genomics applications. escape has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Single-cell sequencing (SCS) is an emerging technology in the across the diverse array of biological fields. Part of the struggle with the high-resolution approach of SCS, is distilling the data down to meaningful scientific hypotheses. escape was created to bridge SCS results, either from raw counts or from the popular Seurat R package, with gene set enrichment analyses (GSEA), allowing users to simply and easily graph outputs. The package accesses the entire Molecular Signature Database v7.0 and enables users to select single, multiple gene sets, and even libraries to perform enrichment analysis on.
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              escape has a low active ecosystem.
              It has 82 star(s) with 12 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 3 open issues and 51 have been closed. On average issues are closed in 7 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of escape is current.

            kandi-Quality Quality

              escape has no bugs reported.

            kandi-Security Security

              escape has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              escape does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              escape releases are not available. You will need to build from source code and install.
              Installation instructions are available. Examples and code snippets are not available.

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            escape Key Features

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            escape Examples and Code Snippets

            No Code Snippets are available at this moment for escape.

            Community Discussions

            QUESTION

            MySQL with special character in the json path
            Asked 2021-Jun-15 at 21:41

            I have a column in mysql which stores a column with json files and the the key of the json can contain any unicode characters. I have a query to calculate the cardinality of the specific key

            ...

            ANSWER

            Answered 2021-Jun-15 at 21:41

            You can use special characters in key names by delimiting them with "":

            Source https://stackoverflow.com/questions/67993770

            QUESTION

            Preserve unicode of emojis in python
            Asked 2021-Jun-15 at 17:52

            I'm dealing with emojis Unicode and wanna save images with its corresponding Unicode like 1F636_200D_1F32B_FE0F for https://emojipedia.org/face-in-clouds/.

            But for https://emojipedia.org/keycap-digit-one/ the files end up 1_FE0F_20E3 and I need them to be 0031_FE0F_20E3 is there a way to tell the encoder to not parse the 1?

            ...

            ANSWER

            Answered 2021-Jun-15 at 17:52

            The unicode_escape codec displays the ASCII characters as characters, and only non-ASCII characters as escape codes. If you want all to be escape codes, you have to format yourself:

            Source https://stackoverflow.com/questions/67962228

            QUESTION

            Python: iterate over unicode characters in string
            Asked 2021-Jun-15 at 17:37

            I would like to iterate over each character in a Unicode string and I'm doing so as such:

            ...

            ANSWER

            Answered 2021-Jun-15 at 17:11

            You could use the split() command in Python to break up your sting into a list. You can then iterate over the elements inside the list. You could do this al follows:

            Source https://stackoverflow.com/questions/67990359

            QUESTION

            PostgreSQL - Escape single quote in an column alias
            Asked 2021-Jun-15 at 15:23

            How to escape single quote in an column alias in PostgreSQL?

            I tried several syntaxes without success:

            ...

            ANSWER

            Answered 2021-Jun-15 at 14:26

            Use double quote for the identifier, and one single quote inside:

            Source https://stackoverflow.com/questions/67988069

            QUESTION

            how to use sed to replace string containing parenthesis
            Asked 2021-Jun-15 at 05:21

            I am trying to use sed to replace the following but not working

            replace datetime.now(pytz.utc) with datetime.utcnow() recursively

            i have tried the following

            ...

            ANSWER

            Answered 2021-Jun-15 at 05:21

            I tried to explain in the comments, but obviously I wasn't clear. Here are two potential solutions to your problem:

            Using your 'grep/xargs' method:

            Source https://stackoverflow.com/questions/67980162

            QUESTION

            Is this enough to prevent xss?
            Asked 2021-Jun-14 at 23:17

            I'm working on a website where there is going to be a lot of user generated content. As an WYSIWYG editor I'm using tinyMCE. As a template engine, I'm using ejs. In order to prevent XSS I decided to use xss npm package. I'm using these custom rulles:

            ...

            ANSWER

            Answered 2021-May-29 at 04:39

            First of all your data probably isn't saved in database the way you presented. In all likelihood it's stored there without any encoding (as it should be).

            EJS in itself, when used correctly, takes care of encoding output for you so that you can safely construct parameterized HTML. But in your case you want to disable this protection to render raw HTML, so yes, you must be careful. There are a couple of security controls at your disposal.

            1. DOMPurify

            I haven't used the xss library personally, it seems to have a lot of downloads and probably it's not a bad option. But DOMPurify is probably better. It also doesn't require configuration and has built-in support for trusted-types (I'll get to that in a minute).

            You would use it twice. First on server-side when the HTML is submitted by the user, and second on client-side when the HTML is rendered by EJS.

            If you are serious about security then you will connect anomaly alerts from the server-side purification to your SIEM/SOC etc. Then you will know when someone has attempted an XSS attack on your website.

            2. Sandboxed Iframes

            Another client-side control that you can implement is sandboxed iframes. Instead of just rendering the HTML on the page, you create an IFRAME, give it a properly configured sandbox attribute, and then set the purified HTML as the content. Now even if something goes wrong with the purification, the malicious HTML would be isolated in its own world.

            3. Content Security Policy

            The coolest and (when used properly) most effective defence against XSS is CSP. How it works is that you give your website restrictions such as "do not execute scripts", "do not load images", etc. And then you allow the scripts that you do want to execute, and nothing else. Now if an attacker manages to inject a script, link, form, etc. on the page, it will not work because it hasn't been specifically allowed.

            I've written about CSP at length here, you will even find specific examples for your case (NodeJS and EJS) with CodeSandbox examples on that article. And in general about XSS protection you can read more here.

            Hope this helps!

            Source https://stackoverflow.com/questions/67978199

            QUESTION

            Getting error about bad escape during start of Arelle
            Asked 2021-Jun-14 at 22:44

            I am trying to get Arelle working on Ubuntu linux 18.04 with Python 3.6.9.

            Step-1: (Download Arelle software):

            git clone https://github.com/Arelle/Arelle.git -b lxml

            Step-2 Install Python LXML:

            apt-get install -y python-lxml

            Step-3 Install Python tk:

            Due to error: 'No module named tkinter'

            ...I install:

            apt-get install python3-tk

            When it's time to start Arelle from terminal, I use:

            ...

            ANSWER

            Answered 2021-Jun-14 at 22:44

            This is an error in Arelle, which shows up for Python 3.6 and later. There is a pull request for it , but that is still open (since July 2017). Given that Python 3.6 has been out for quite a while, I don't know why this hasn't been fixed.

            You are using the lxml branch, which has been stale for 10 years. So perhaps this error has actually been fixed (even if the pull request is still open) on the master brach, but not on the lxml branch. Try installing from master first, if that is an option for you.

            Source https://stackoverflow.com/questions/67969559

            QUESTION

            pg_wal folder on standby node not removing files (postgresql-11)
            Asked 2021-Jun-14 at 15:00

            I have master-slave (primary-standby) streaming replication set up on 2 physical nodes. Although the replication is working correctly and walsender and walreceiver both work fine, the files in the pg_wal folder on the slave node are not getting removed. This is a problem I have been facing every time I try to bring the slave node back after a crash. Here are the details of the problem:

            postgresql.conf on master and slave/standby node

            ...

            ANSWER

            Answered 2021-Jun-14 at 15:00

            You didn't describe omitting pg_replslot during your rsync, as the docs recommend. If you didn't omit it, then now your replica has a replication slot which is a clone of the one on the master. But if nothing ever connects to that slot on the replica and advances the cutoff, then the WAL never gets released to recycling. To fix you just need to shutdown the replica, remove that directory, restart it, (and wait for the next restart point to finish).

            Do they need to go to wal_archive folder on the disk just like they go to wal_archive folder on the master node?

            No, that is optional not necessary. It is set by archive_mode = always if you want it to happen.

            Source https://stackoverflow.com/questions/67967404

            QUESTION

            C# - Stopping timer from another method
            Asked 2021-Jun-14 at 13:17

            I'm trying to learn OOP with C#. Target framework: .net core 3.1. I have two classes. In the first one I initialize timer:

            ...

            ANSWER

            Answered 2021-Jun-14 at 13:17

            You're very close! As Chamika pointed out in the comments, you're interacting with two different instances of your Test class. The new keyword means just that, a new instance is created of Test.

            To correct this, you can create either a global variable or pass the instance to your Start() and Stop() methods.

            First, I'm going to show the global variable solution.

            Without editing your Test class, I've modified your Program class. I've created a global variable: myTimer. myTimer is set to a new instance of the Test class. I also removed the other instance creations from your Start() and Stop() methods. Because they are in the same Program class, they will be able to interact with your global variable whether it's set to public or private!

            Source https://stackoverflow.com/questions/67941294

            QUESTION

            Moving non-Copy variable into async closure: captured variable cannot escape `FnMut` closure body
            Asked 2021-Jun-13 at 18:47

            I'm trying to get clokwerk to schedule an asynchronous function to run every X seconds.

            The docs show this example:

            ...

            ANSWER

            Answered 2021-Jun-13 at 18:47

            In order to understand what's going on, I'll reformat the code a bit in order to make it more clear and explicit:

            Your original code:

            Source https://stackoverflow.com/questions/67960931

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install escape

            You can download it from GitHub.

            Support

            Questions, comments, suggestions, please feel free to contact Nick Borcherding via this repository, email, or using twitter.
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            gh repo clone ncborcherding/escape

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