escape | Easy single cell analysis platform for enrichment | Genomics library
kandi X-RAY | escape Summary
kandi X-RAY | escape Summary
Single-cell sequencing (SCS) is an emerging technology in the across the diverse array of biological fields. Part of the struggle with the high-resolution approach of SCS, is distilling the data down to meaningful scientific hypotheses. escape was created to bridge SCS results, either from raw counts or from the popular Seurat R package, with gene set enrichment analyses (GSEA), allowing users to simply and easily graph outputs. The package accesses the entire Molecular Signature Database v7.0 and enables users to select single, multiple gene sets, and even libraries to perform enrichment analysis on.
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QUESTION
I have a column in mysql which stores a column with json files and the the key of the json can contain any unicode characters. I have a query to calculate the cardinality of the specific key
...ANSWER
Answered 2021-Jun-15 at 21:41You can use special characters in key names by delimiting them with ""
:
QUESTION
I'm dealing with emojis Unicode and wanna save images with its corresponding Unicode like 1F636_200D_1F32B_FE0F
for https://emojipedia.org/face-in-clouds/.
But for https://emojipedia.org/keycap-digit-one/ the files end up 1_FE0F_20E3
and I need them to be 0031_FE0F_20E3
is there a way to tell the encoder to not parse the 1
?
ANSWER
Answered 2021-Jun-15 at 17:52The unicode_escape
codec displays the ASCII characters as characters, and only non-ASCII characters as escape codes. If you want all to be escape codes, you have to format yourself:
QUESTION
I would like to iterate over each character in a Unicode string and I'm doing so as such:
...ANSWER
Answered 2021-Jun-15 at 17:11You could use the split() command in Python to break up your sting into a list. You can then iterate over the elements inside the list. You could do this al follows:
QUESTION
How to escape single quote in an column alias in PostgreSQL?
I tried several syntaxes without success:
...ANSWER
Answered 2021-Jun-15 at 14:26Use double quote for the identifier, and one single quote inside:
QUESTION
I am trying to use sed to replace the following but not working
replace datetime.now(pytz.utc)
with datetime.utcnow()
recursively
i have tried the following
...ANSWER
Answered 2021-Jun-15 at 05:21I tried to explain in the comments, but obviously I wasn't clear. Here are two potential solutions to your problem:
Using your 'grep/xargs' method:
QUESTION
ANSWER
Answered 2021-May-29 at 04:39First of all your data probably isn't saved in database the way you presented. In all likelihood it's stored there without any encoding (as it should be).
EJS in itself, when used correctly, takes care of encoding output for you so that you can safely construct parameterized HTML. But in your case you want to disable this protection to render raw HTML, so yes, you must be careful. There are a couple of security controls at your disposal.
1. DOMPurify
I haven't used the xss library personally, it seems to have a lot of downloads and probably it's not a bad option. But DOMPurify is probably better. It also doesn't require configuration and has built-in support for trusted-types (I'll get to that in a minute).
You would use it twice. First on server-side when the HTML is submitted by the user, and second on client-side when the HTML is rendered by EJS.
If you are serious about security then you will connect anomaly alerts from the server-side purification to your SIEM/SOC etc. Then you will know when someone has attempted an XSS attack on your website.
2. Sandboxed Iframes
Another client-side control that you can implement is sandboxed iframes. Instead of just rendering the HTML on the page, you create an IFRAME, give it a properly configured sandbox attribute, and then set the purified HTML as the content. Now even if something goes wrong with the purification, the malicious HTML would be isolated in its own world.
3. Content Security Policy
The coolest and (when used properly) most effective defence against XSS is CSP. How it works is that you give your website restrictions such as "do not execute scripts", "do not load images", etc. And then you allow the scripts that you do want to execute, and nothing else. Now if an attacker manages to inject a script, link, form, etc. on the page, it will not work because it hasn't been specifically allowed.
I've written about CSP at length here, you will even find specific examples for your case (NodeJS and EJS) with CodeSandbox examples on that article. And in general about XSS protection you can read more here.
Hope this helps!
QUESTION
I am trying to get Arelle working on Ubuntu linux 18.04 with Python 3.6.9.
Step-1: (Download Arelle software):
git clone https://github.com/Arelle/Arelle.git -b lxml
Step-2 Install Python LXML:
apt-get install -y python-lxml
Step-3 Install Python tk:
Due to error: 'No module named tkinter'
...I install:
apt-get install python3-tk
When it's time to start Arelle from terminal, I use:
...ANSWER
Answered 2021-Jun-14 at 22:44This is an error in Arelle, which shows up for Python 3.6 and later. There is a pull request for it , but that is still open (since July 2017). Given that Python 3.6 has been out for quite a while, I don't know why this hasn't been fixed.
You are using the lxml
branch, which has been stale for 10 years. So perhaps this error has actually been fixed (even if the pull request is still open) on the master brach, but not on the lxml
branch. Try installing from master first, if that is an option for you.
QUESTION
I have master-slave (primary-standby) streaming replication set up on 2 physical nodes. Although the replication is working correctly and walsender and walreceiver both work fine, the files in the pg_wal
folder on the slave node are not getting removed. This is a problem I have been facing every time I try to bring the slave node back after a crash. Here are the details of the problem:
postgresql.conf on master and slave/standby node
...ANSWER
Answered 2021-Jun-14 at 15:00You didn't describe omitting pg_replslot during your rsync, as the docs recommend. If you didn't omit it, then now your replica has a replication slot which is a clone of the one on the master. But if nothing ever connects to that slot on the replica and advances the cutoff, then the WAL never gets released to recycling. To fix you just need to shutdown the replica, remove that directory, restart it, (and wait for the next restart point to finish).
Do they need to go to wal_archive folder on the disk just like they go to wal_archive folder on the master node?
No, that is optional not necessary. It is set by archive_mode = always
if you want it to happen.
QUESTION
I'm trying to learn OOP with C#. Target framework: .net core 3.1. I have two classes. In the first one I initialize timer:
...ANSWER
Answered 2021-Jun-14 at 13:17You're very close! As Chamika pointed out in the comments, you're interacting with two different instances of your Test
class. The new
keyword means just that, a new
instance is created of Test
.
To correct this, you can create either a global variable
or pass the instance to your Start()
and Stop()
methods.
First, I'm going to show the global variable
solution.
Without editing your Test
class, I've modified your Program
class. I've created a global variable
: myTimer
. myTimer
is set to a new instance of the Test
class. I also removed the other instance creations from your Start()
and Stop()
methods. Because they are in the same Program
class, they will be able to interact with your global variable
whether it's set to public
or private
!
QUESTION
ANSWER
Answered 2021-Jun-13 at 18:47In order to understand what's going on, I'll reformat the code a bit in order to make it more clear and explicit:
Your original code:
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