ggseqlogo | Publication-quality sequence logos in R | Genomics library

by omarwagih R Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | ggseqlogo Summary

ggseqlogo is a R library typically used in Artificial Intelligence, Genomics applications. ggseqlogo has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

ggseqlogo is an R package for generating publication-ready sequence logos using ggplot2.

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Support

ggseqlogo has a low active ecosystem.

It has 170 star(s) with 24 fork(s). There are 13 watchers for this library.

It had no major release in the last 6 months.

There are 15 open issues and 12 have been closed. On average issues are closed in 118 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ggseqlogo is current.

Quality

ggseqlogo has 0 bugs and 0 code smells.

Security

ggseqlogo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ggseqlogo code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ggseqlogo does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

ggseqlogo releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

It has 502 lines of code, 0 functions and 1 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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ggseqlogo Key Features

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ggseqlogo Examples and Code Snippets

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Community Discussions

Trending Discussions on ggseqlogo

R: Nice way to show ggplots on x and y-axis of another ggplot

How can I control the font size of sequence logos?

QUESTION

R: Nice way to show ggplots on x and y-axis of another ggplot

Asked 2019-Jan-04 at 12:45

I'm pretty sure this is asked somewhere already, however I could not find it

Question
How can I show ggplots on both the x and y-axis of anohter ggplot.

...

ANSWER

Answered 2019-Jan-04 at 12:45

The package ggExtra is capable of plotting plots on both axis of a scatterplot, as stated in their manual:

ggExtra is a collection of functions and layers to enhance ggplot2. The flagship function is ggMarginal, which can be used to add marginal histograms/boxplots/density plots to ggplot2 scatterplots.

Unfortunately, I could not find a function to provide the plots myself therefore I inspected the source code and came up with this simple solution:

Source https://stackoverflow.com/questions/54037721

QUESTION

How can I control the font size of sequence logos?

Asked 2017-Mar-29 at 17:27

I have many sequence logos, which I plot using ggplot2 and ggseqlogo. The vertical axis remains constant, but the horizontal axis is differing for each plot.

I am not aware how I can create sequence logos with identical width for each letter. I tried to manually adjust the letter width using stack_width for varying length of my sequence. Unfortunately, that leads to a gap between the individual letters.

How can I achieve identical letter sizes for plots with varying sequence length without introducing a gap between the letters?

Below an example of the issue I am facing:

...

ANSWER

Answered 2017-Mar-29 at 17:27

Actually, how about something like this?

Source https://stackoverflow.com/questions/42997819

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