ascend | Single Cell Expression , Normalization and Differential | Genomics library

 by   powellgenomicslab R Version: Current License: No License

kandi X-RAY | ascend Summary

kandi X-RAY | ascend Summary

ascend is a R library typically used in Artificial Intelligence, Genomics, Pytorch applications. ascend has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

ascend (Analysis of Single Cell Expression, Normalisation and Differential expression) is a user-friendly scRNA-seq analysis toolkit implemented in R. Using pre-existing and novel methods, ascend offers quick and robust tools for quality control, normalisation, dimensionality reduction, clustering and differential expression.
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              ascend has a low active ecosystem.
              It has 6 star(s) with 6 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 2 open issues and 0 have been closed. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of ascend is current.

            kandi-Quality Quality

              ascend has no bugs reported.

            kandi-Security Security

              ascend has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              ascend does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
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              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              ascend releases are not available. You will need to build from source code and install.
              Installation instructions, examples and code snippets are available.

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            ascend Key Features

            No Key Features are available at this moment for ascend.

            ascend Examples and Code Snippets

            No Code Snippets are available at this moment for ascend.

            Community Discussions

            QUESTION

            How to fix this Maximum depth exceeded error with useEffect and useState?
            Asked 2021-Jun-15 at 18:54

            I have events which is pulled from redux, and if the events array contains data, then updateData will be used to filter events into the state var data.

            I have data and events both added to the dependency array as talked about here. but I'm still getting this error:

            ...

            ANSWER

            Answered 2021-Jun-15 at 18:54

            Because you are executing useEffect callback whenever data changes and you are changing data in useEffect callback.

            Remove data as dependency.

            Use this code to fix it

            Source https://stackoverflow.com/questions/67991891

            QUESTION

            Change sort asc & desc onclick on two button to sort onclick on one button - React
            Asked 2021-Jun-15 at 12:45

            I'm new to React. I have two button for sort. But I want to change for sort both ascending and descending in one button.

            ...

            ANSWER

            Answered 2021-Jun-15 at 09:43

            QUESTION

            Identify cases where data sequence changes based on other column UserIDs
            Asked 2021-Jun-15 at 04:30

            I am working on a data frame df which is as below:

            Input: ...

            ANSWER

            Answered 2021-Jun-15 at 03:42

            Here's a fairly straightforward way where we test the sign of the lagged difference. If the mid_sum difference sign is the same as the final_sum difference sign, they are "consistent".

            Source https://stackoverflow.com/questions/67979625

            QUESTION

            How can I limit and sort on document ID in firestore?
            Asked 2021-Jun-15 at 04:04

            I have a collection where the documents are uniquely identified by a date, and I want to get the n most recent documents. My first thought was to use the date as a document ID, and then my query would sort by ID in descending order. Something like .orderBy(FieldPath.documentId, descending: true).limit(n). This does not work, because it requires an index, which can't be created because __name__ only indexes are not supported.

            My next attempt was to use .limitToLast(n) with the default sort, which is documented here.

            By default, Cloud Firestore retrieves all documents that satisfy the query in ascending order by document ID

            According to that snippet from the docs, .limitToLast(n) should work. However, because I didn't specify a sort, it says I can't limit the results. To fix this, I tried .orderBy(FieldPath.documentId).limitToLast(n), which should be equivalent. This, for some reason, gives me an error saying I need an index. I can't create it for the same reason I couldn't create the previous one, but I don't think I should need to because they must already have an index like that in order to implement the default ordering.

            Should I just give up and copy the document ID into the document as a field, so I can sort that way? I know it should be easy from an algorithms perspective to do what I'm trying to do, but I haven't been able to figure out how to do it using the API. Am I missing something?

            Edit: I didn't realize this was important, but I'm using the flutterfire firestore library.

            ...

            ANSWER

            Answered 2021-Jun-15 at 00:56

            From what I've found:

            FieldPath.documentId does not match on the documentId, but on the refPath (which it gets automatically if passed a document reference).

            As such, since the documents are to be sorted by timestamp, it would be more ideal to create a timestamp fieldvalue for createdAt rather than a human-readable string which is prone to string length sorting over the value of the string.

            From there, you can simply sort by date and limit to last. You can keep the document ID's as you intend.

            Source https://stackoverflow.com/questions/67978364

            QUESTION

            Pandas: Cannot subtract date-time objects (timedelta, datetime)
            Asked 2021-Jun-15 at 02:51

            Here is the setup:

            ...

            ANSWER

            Answered 2021-Jun-15 at 01:46

            Since both columns are pandas Timestamp, you can do this:

            Source https://stackoverflow.com/questions/67978919

            QUESTION

            Students with Highest Mark
            Asked 2021-Jun-14 at 19:36

            Write a query to display the student names and the maximum mark scored by them in any subject, ordered by name in ascending order. Give an alias to the maximum mark as MAX_MARK. I am not able to find the logic for this. Kindly help me with it. Do it in oracle SQL I am at beginner level in SQL.

            ...

            ANSWER

            Answered 2021-Jun-14 at 18:39

            You don't need subject there. Question asks Max mark per student, regardless of subject:

            Source https://stackoverflow.com/questions/67975345

            QUESTION

            Rotate around its own axis in OoP with Processing
            Asked 2021-Jun-14 at 18:01

            i am currently a bit stuck in programming a PROCESSING Sketch. Lets say I have a bunch of rectangles that move up the sketch window like bubbles… They have different sizing and color… And I want to let them rotate around its own axis while they move up. I tried using pushMatrix(); and popMatrix(); – and even translate(); but I guess its a bit more complicated because i use OoP and variables in the constructor for X and Y Position of each rectangle…

            This is the code to my sketch:

            ...

            ANSWER

            Answered 2021-Jun-14 at 18:01

            When rotating something in place, what usually works best is using translate in such a way that you're drawing it "at the origin". In your case, that means that you want to translate such that the first two parameters of rect() are both zero. So you translate, then rotate, then draw the rectangle "at the origin".

            Solution:

            Source https://stackoverflow.com/questions/67888620

            QUESTION

            Python pandas sort_values() with nested list
            Asked 2021-Jun-14 at 16:19

            I want to sort a nested dict in pyhon via pandas.

            ...

            ANSWER

            Answered 2021-Jun-13 at 15:16

            QUESTION

            Scalable table sorting approach
            Asked 2021-Jun-13 at 18:52

            I want to sort each column in react. I can do it, but forcing the code, for example if I have this array and display it in a html table, I want when I click id it sort in ascending order, when I click name it sort in ascending order and when click again it sort descending order, i want the same with name and age. And at the same time i want an arrow that if that column is in ascendig is looking up otherwise is looking down.

            ...

            ANSWER

            Answered 2021-Jun-13 at 18:52

            You may want to have sorting callbacks within a mapping object (by property name or by property type).

            Also, do not forget to leverage useMemo()/ useCallback() hooks to boost sorting performance through memoizing the sorting output (which may be beneficial for large number of items):

            Source https://stackoverflow.com/questions/67961070

            QUESTION

            Reverse range colorscale plotly
            Asked 2021-Jun-13 at 11:07

            I was wondering if it is possible to make my colorscale bar ascending (from 1 to 4) instead of descending (from 4 to 1). Does anyone have clue? The picture of my current bar is underneath the code.

            ...

            ANSWER

            Answered 2021-Jun-13 at 11:07

            Just add reversescale=True as below:

            Source https://stackoverflow.com/questions/67956759

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ascend

            Feel free to skip some steps if you have already done those steps. Please follow the R installation instructions here. If you are a Windows user, make sure you install Rtools. Please note the ascend package requires R version >= 3.5.0. The latest version of R version 3.6 is best. Please setup Rcpp and RcppArmadillo before installing ascend. Instructions are operating system-dependant, so please refer to this page for setup instructions. You will need to install the following packages to run the development version of ascend. Feel free to skip these steps if you already have these packages.
            devtools: This package will be used to load the development version of ascend.
            tidyverse: This is a series of R packages for data science and visualisation. This will install packages such as dplyr, ggplot2 and tidyr.
            data.table: Please follow the instructions on this page for your operating system.

            Support

            Please report any bugs on the Issues tracker of this repository. Feel free to send any other queries to a.senabouth@garvan.org.au.
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            gh repo clone powellgenomicslab/ascend

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