sctransform | R package for modeling single cell UMI expression data using regularized negative binomial regressio | Genomics library

 by   satijalab R Version: v0.3.5 License: GPL-3.0

kandi X-RAY | sctransform Summary

kandi X-RAY | sctransform Summary

sctransform is a R library typically used in Artificial Intelligence, Genomics applications. sctransform has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

R package for modeling single cell UMI expression data using regularized negative binomial regression

            kandi-support Support

              sctransform has a low active ecosystem.
              It has 162 star(s) with 32 fork(s). There are 16 watchers for this library.
              It had no major release in the last 12 months.
              There are 36 open issues and 116 have been closed. On average issues are closed in 26 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of sctransform is v0.3.5

            kandi-Quality Quality

              sctransform has 0 bugs and 0 code smells.

            kandi-Security Security

              sctransform has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              sctransform code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              sctransform is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              sctransform releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            sctransform Key Features

            No Key Features are available at this moment for sctransform.

            sctransform Examples and Code Snippets

            No Code Snippets are available at this moment for sctransform.

            Community Discussions

            Trending Discussions on sctransform


            Changing the legend in complex heatmap
            Asked 2021-Jan-10 at 21:30

            With this code I have this complexheatmap



            Answered 2021-Jan-10 at 21:30
            Heatmap(mat, border = T, show_column_names = F,
                    rect_gp = gpar(col = "white", lwd = 1),
                    column_split = response$response, 
                    col = c("-2" = "blue", "0" = "grey", "1" = "red"),
                    heatmap_legend_param = list(at = c("-2", "0", "1"), labels = c("Del", "Netral", "Amp")),
                    show_column_dend = F,
                    show_row_dend = F,
                    left_annotation = left_annotation,
                    right_annotation = right_annotation,name = "CNV",
                    row_names_gp = gpar("fontface" = "italic")


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install sctransform

            You can download it from GitHub.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            gh repo clone satijalab/sctransform

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