scAI | unsupervised approach for the integrative analysis | Genomics library
kandi X-RAY | scAI Summary
kandi X-RAY | scAI Summary
Once the single cell multi-omics data are decomposed into multiple biologically relevant factors, the package provides functionality for further data exploration, analysis, and visualization. Users can:. Check out our paper (Suoqin Jin#, Lihua Zhang# & Qing Nie*, Genome Biology, 2020) for the detailed methods and applications.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of scAI
scAI Key Features
scAI Examples and Code Snippets
if(!require(devtools)){ install.packages("devtools")}
install.packages("RcppEigen")
devtools::install_github("jaredhuling/rfunctions")
library(devtools)
install_github('linxihui/NNLM')
install_github("yanwu2014/swne")
install_github("jokergoo/Comple
object <- selectFeatures(object, assay = "RNA")
object <- run_scAI(object, K, do.fast = TRUE, hvg.use1 = TRUE)
object <- selectFeatures(object, assay = "RNA")
loci.use <- searchGeneRegions(genes = object@var.features[[1]], species = "mou
sudo installer -pkg \
/Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg \
-target /
Community Discussions
Trending Discussions on scAI
QUESTION
I want to find all pubs in a specific area using the Overpass API and selecting the area with geocodeArea.
Testing the following query on overpass-turbo.eu gives me the desired result:
...ANSWER
Answered 2018-Sep-10 at 09:15{{geocodeArea: xxx }}
is a special feature of overpass turbo and not part of Overpass API. overpy uses Overpass API directly which means you can't use this keyword.
However {{geocodeArea: xxx }}
just tells overpass turbo to perform a geocoding request, i.e. transform an address into a geographic location. You can do the same, e.g. by making a call to Nominatim, Photon or any other geocoder.
QUESTION
When using optimizer.minimize()
with model.predict()
to train a model with a loss function in TensorFlow.js, I encounter an issue. This only occurs when I use a maxPooling2D
layer in a convolutional neural network with code similar to the code below. It produces this error: Cannot read property 'backend' of undefined
. I'm not sure what is causing this or how to resolve it. The error does not occur when using a convolutional layer (tf.layers.conv2d()
) without any pooling layers. I'm using TensorFlow.js version 0.14.2
and Google Chrome version 71.0.3578.98
. This error can be reproduced using the following code:
ANSWER
Answered 2019-Feb-02 at 19:10In TensorFlow.js 0.14+, there is a change that disables backpropagation support in the Model.predict() method. You can use the Model.apply() method with the {training: true} flag to fix your code.
I.e., change
QUESTION
So i am trying to define an exact shape (outter layer) of a building from .osm node references because I need to create more detail structure inside it (rooms, walls) based of some assumption.
Until now I've extracted the node's coordinate from its reference of 'building:part' using pyosmium, stored the node's coordinates to a list of tuples, reconstructed it using Polygon function from shapely and plotted it using mplleaflet. But somehow the nodes from the reference aren't sorted and when I try to plot it, there are a lot of intersections shown.
My current method to solve this sorting problem is following:
...ANSWER
Answered 2018-Jun-14 at 09:12Nodes are referenced by ways in the correct order, i.e. so that they are adjacent to each other. You don't need to perform any manual sorting if you read the list of referenced node IDs correctly. Manual sorting is only required for relation elements.
Unfortunately I'm not familiar with pyosmium so I can't tell you what's wrong with your code.
QUESTION
This is a GoLang, Firebase AdminSDK question.
This example works to iterate through all of the documents in a FireStore DB.
How can I get the Document Name?
To put another way: If the collection name is JohnyCollection
, and JohnyCollection
has 20 Documents called (Document1
, Document2
.... Document20
), how do I get the document name in golang Code?
//========================================
...ANSWER
Answered 2018-Oct-03 at 13:35You can get the document ID from the DocumentSnapshot
, by first looking up the DocumentRef
:
QUESTION
ANSWER
Answered 2017-Jun-28 at 18:46Try this:
QUESTION
Problem :
Using Agent run and send mail give a different link
Mail Contain a link which is not include database
I set it send to a yahoo mail
...
ANSWER
Answered 2017-Jun-16 at 11:34First of all: Sending an external mail with a custom form like you do it is not the best Idea, as the target system might not be able to render everything accordingly.
That said, I would first create a document that contains all data and then RENDER it to a maildoc. code would look like this:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install scAI
Troubleshooting: Installing RcppEigen and rfunctions on R>=3.5 requires Clang >= 6 and gfortran-6.1. For MacOS, it's recommended to follow guidance on the official R page here OR the post. For Windows, please ensure that Rtools is installed. scAI provides functionality for further data exploration, analysis, and visualization. A couple of excellent packages need to be installed. Using UMAP and FIt-SNE is recommended for computational efficiency when using reducedDims on very large datasets. -- install UMAP Python package: pip install umap-learn. Please check here if there is any trouble. -- install FIt-SNE R package: Installing and compiling the necessary software requires the use of FIt-SNE and FFTW. For detailed instructions of installation, please visit this page.
Please consider install RcppEigen and rfunctions if they are not automatically installed.
Install other dependencies
Install Leiden algorithm for identifying cell clusters: pip install leidenalg. Please check here if there is any trouble.
Install UMAP and FIt-SNE for faster dimension reduction in reducedDims
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