velocyto.R | RNA velocity estimation in R | Genomics library

by velocyto-team R Version: 0.6 License: No License

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | velocyto.R Summary

velocyto.R is a R library typically used in Artificial Intelligence, Genomics applications. velocyto.R has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

RNA velocity estimation in R.

Support

Quality

Security

License

Reuse

Support

velocyto.R has a low active ecosystem.

It has 158 star(s) with 153 fork(s). There are 19 watchers for this library.

It had no major release in the last 12 months.

There are 139 open issues and 41 have been closed. On average issues are closed in 46 days. There are 8 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of velocyto.R is 0.6

Quality

velocyto.R has 0 bugs and 0 code smells.

Security

velocyto.R has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

velocyto.R code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

velocyto.R does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

velocyto.R releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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velocyto.R Key Features

No Key Features are available at this moment for velocyto.R.

velocyto.R Examples and Code Snippets

No Code Snippets are available at this moment for velocyto.R.

Community Discussions

Trending Discussions on velocyto.R

Unable to install 'Velocyto.R' from Github

QUESTION

Unable to install 'Velocyto.R' from Github

Asked 2020-Jun-08 at 07:39

I am a beginner in R trying to analyze my scRNA-seq data with velocyto.R in R studio. Following velocyto tutorial, I tried installing velocyto.R as below:

...

ANSWER

Answered 2020-Jun-08 at 07:39

As your error log says C:/..., you probably use Windows. According to velocyto's README it seems that this package runs only on unix-flavored systems with C++11, Open MP, boost, igraph and hdf5c++ libraries.

This can be the problem: read the velocyto's GitHub issue #40, maybe you'll need to run this under WSL...?

Source https://stackoverflow.com/questions/62256191

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install velocyto.R

The easiest way to install velocyto.R is using devtools::install_github() from R:. You need to have boost (e.g. sudo apt-get install libboost-dev) and openmp libraries installed. You can see detailed installation commands in the dockers/debian9/Dockerfile.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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