flo | Same species annotation lift over pipeline | Genomics library
kandi X-RAY | flo Summary
kandi X-RAY | flo Summary
Lift over is a way of mapping annotations from one genome assembly to another. The idea "lift over" is same as what tools like UCSC LiftOver, NCBI's LiftUp web service do. However, NCBI and UCSC's web services are available only for a limited number of species. To perform lift over locally, one can use UCSC chain files (Kent et al 2003) with programs such as UCSC's liftOver or CrossMap. A chain file captures large, homologous segments between two genomes as chains of gapless blocks of alignment. One way of generating chain files is using this bash script and UCSC tools. flo is an implementation of the above script in Ruby programming language. Further, both liftOver and CrossMap process GFF files line by line instead of transcripts as a whole. This results in some non-biologically meaningful output. flo provides a basic filtering of UCSC liftOver's GFF output.
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QUESTION
I have a layout working with different number of entry boxes.
On return keypress event i am taking the values from all entry boxes and resetting the values. After that the cursor is place at Last entry box only. How do i move the cursor to first entry box.
Used some other example from web here.
...ANSWER
Answered 2021-Jun-01 at 12:36e1.setFocus() will give focus to e1, this is what you are looking for.
Another method is self.focusNextChild() which will give focus to your first entry if your current cursor is in the last LineEdit (In other words, this method will give the focus to the first lineEdit only if the focus is already in the last one).
Do note: If your current cursor is not at the last lineedit when the return key is pressed the focusNextChild method will focus the next lineedit not the first one.
QUESTION
How can I clear a mask in python? I'm using setInputMask to insert a mask in a qLineEdit but after a period i want to clear the lineEdit (remove the mask). I tried to use clearMask, clear, and setText("") but none worked.
The MVCE:
...ANSWER
Answered 2021-May-22 at 02:50You have to pass an empty string to setInputMask() As the docs point out:
If no mask is set, inputMask() returns an empty string.
QUESTION
I am new to R and working on baseball data from retrosheet. I am trying to download multiple files from my directory. For example, this ll object contains two names of TXT file "GL2001.TXT" and "GL2002.TXT". This is the script. This worked on my console.
...ANSWER
Answered 2021-May-21 at 12:40This is because you are using dplyr and plyr packages simultaneously.
summarize function is masked from dplyr by plyr package.
Try this:
QUESTION
I have a database table with Person objects. My web service receives a list of Person objects to update this Person table. My application now contains 2 lists:
...ANSWER
Answered 2021-May-14 at 05:59Unless you override equals method in your Person class to actually check for the fields, you need to check the values of the object and not the references. Here is an example that will work assuming, lname and fname are used to identify a record. Also, as for the records that are the same, we don't have to add them to the list so our filter method will return an empty object, to deal with that we can use Optional.
A more efficient way would be to create a HashMap with fname and lname as keys and person object as value, then you won't have to filter again and again, thus, reducing running time by a factor of n.
QUESTION
I have exactly this type of data in console
...ANSWER
Answered 2021-May-04 at 13:41It is because k in the following line:
QUESTION
In a JSON file like below I put a list of commands that I will need in my application. For an unknown reason, the validator returns me an error.
...ANSWER
Answered 2021-Apr-02 at 12:27The error isn't cause in line 13 is caused in line 14. The problem is the \ symbol. I've fixed your issue:
QUESTION
I'm having trouble estimating the standard errors from the predicted probabilities from a ERGM model, to calculate a confidence interval. Getting the predicted probabilities is not a problem, but I want to get a sense of the uncertainty surrounding the predictions.
Below is a reproduceable example based on the data set of marriage and business ties among Renaissance Florentine families.
...ANSWER
Answered 2021-Mar-25 at 03:50This is the correct interpretation for a dyad-independent model such as this one. For a dyad-dependent model, it would be the conditional probability given the rest of the network.
You can obtain the standard error of the prediction on the logit scale by rewriting your last line as a dot product of a weight vector and the coefficient vector:
QUESTION
Am running the command below:- sudo apt install curl -fLo ~/.vim/autoload/plug.vim --create-dirs https://raw.githubusercontent.com/junegunn/vim-plug/master/plug.vim
I get this error:-
E: Command line option 'L' [from -fLo] is not understood in combination with the other options.
...ANSWER
Answered 2021-Feb-13 at 06:29apt install and curl are entirely different commands. sudo apt install curl would install the curl program itself, and then you can do curl -fLo .... You should look into what these commands mean before copy pasting them into your terminal and hitting enter.
QUESTION
I've built a fairly simple c code that reads a pgm image, splits it in different sections and sends it to various cores to elaborate it.
In order to account for some elaboration margins (each core has to access a larger area of the image than the it needs to write on), I can't simply split the image but I first have to create an array where I add the before mentioned margins.
As a quick example: an image is 1600x1200 (width x height), I have 2 cores, I want to access an area of 3x3 centered on the pixel and I'm splitting this image horizontal line by horizontal line then the subdivision would be -> the first core gets the pixels from 0 to 6011600, the second core gets the pixels from 5091600 to 1200*1600.
Now, I believe there is nothing wrong in how I implemented this in my program, still I get this error:
...ANSWER
Answered 2021-Jan-13 at 10:15In the code shown here, start and end are used uninitialised in the computations of first and last:
QUESTION
Another attempt, I wrote a piss poor question the first time. I hope this is better.
I have 2 tables - Patient and clinicalparameterh:
...ANSWER
Answered 2020-Dec-13 at 01:16Well, you can use a correlated subquery to get the most recent date. The rest is filtering. In standard SQL, you can do this as:
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Install flo
On a UNIX-like operating system, using your system’s package manager is easiest. However, the packaged Ruby version may not be the newest one. There is also an installer for Windows. Managers help you to switch between multiple Ruby versions on your system. Installers can be used to install a specific or multiple Ruby versions. Please refer ruby-lang.org for more information.
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