alen | Simple terminal alignment viewer | Genomics library

 by   jakobnissen Rust Version: v0.3.0 License: MIT

kandi X-RAY | alen Summary

kandi X-RAY | alen Summary

alen is a Rust library typically used in Artificial Intelligence, Genomics applications. alen has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

It's a command-like program to view DNA or protein alignments in FASTA formats. Alen is meant for having a quick view of an alignment without having to leave the shell. It's not an alignment editor.
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            kandi-support Support

              alen has a low active ecosystem.
              It has 29 star(s) with 1 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 1 open issues and 1 have been closed. On average issues are closed in 9 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of alen is v0.3.0

            kandi-Quality Quality

              alen has 0 bugs and 0 code smells.

            kandi-Security Security

              alen has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              alen code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              alen is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              alen releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            Get all kandi verified functions for this library.

            alen Key Features

            No Key Features are available at this moment for alen.

            alen Examples and Code Snippets

            No Code Snippets are available at this moment for alen.

            Community Discussions

            QUESTION

            Pandas Merge Not Working When Values Are an Exact Match
            Asked 2022-Apr-01 at 20:33

            Below is my code and Dataframes. stats_df is much bigger. Not sure if it matters, but the column values are EXACTLY as they appear in the actual files. I can't merge the two DFs without losing 'Alex Len' even though both DFs have the same PlayerID value of '20000852'

            ...

            ANSWER

            Answered 2022-Apr-01 at 20:33

            You need to specify the column you want to merge on using the on keyword argument:

            Source https://stackoverflow.com/questions/71712312

            QUESTION

            Replace "exported_instance" label value from Prometheus
            Asked 2022-Mar-07 at 17:18

            this label (exported_instance) is always added in every metric automatically.

            ...

            ANSWER

            Answered 2022-Mar-07 at 17:18

            job and instance labels are somewhat special with Prometheus. instance comes from the __address__ label and represents a host and port from which the metric came.

            You get metrics with exported_ prefix if the collected data already have one of the predefined labels. In other words, exported_instance is the instance label in your exporter.

            The best way around this is to avoid using any of the special labels in the exporter. If for some reason it is mandatory to use one of these labels, you can perform relabeling at the metric_relabel_configs:

            Source https://stackoverflow.com/questions/71380816

            QUESTION

            How do I get a function's full name and arguments as string from a list of function objects in Python?
            Asked 2022-Feb-04 at 22:24

            As the title says, I am interested in a list of all functions inside my python module as string. So far I have a list of function objects with their possible arguments.

            For example, with NumPy

            ...

            ANSWER

            Answered 2022-Feb-04 at 22:05

            Although it is not perfect, how about using inspect.signature?

            Source https://stackoverflow.com/questions/70992967

            QUESTION

            Alphabetize by Last Name
            Asked 2022-Jan-20 at 16:47

            how do we Alphabetize by Last Name the data that is coming from an array of objects , a thing to take note in here is that there is no separated propert like FirstName and LastName , the property is holding it as fullname (please check my example data below)

            So if we alphabetize the data by last name the result would be in this order based on the data below.

            One concern also if what if names are "James van der Wal" and "Mary Tyler Moore" and "Erik the Great" and "Madonna"?

            What is the efficient way to handle this scenario ? Help would be much appreciated , thanks. Currently I have a solution below but willing to accept inputs. Thanks.

            ...

            ANSWER

            Answered 2022-Jan-20 at 16:47

            Without additional external input describing what constitutes the name, a rule of thumb I've used is to define the first name as the space delimited first word, and the last name as the rest...

            Taking that idea, and sorting with it...

            Source https://stackoverflow.com/questions/70789454

            QUESTION

            Dynamically rendering images into modal form mapped array of images
            Asked 2022-Jan-14 at 20:53

            Im working on a project and only started recently with React.So far i made card component that is dynamically rendering data from js-file with a mapped function.One of the data being rendered are (stored in array) images where im displaying the first img and setting up a onClick function that opens the modal.

            And this is where i'm stuck.Modal opens with non targeted img, where i would like to display the clicked image in modal first and pass the rest of the images of that array that can be clicked through.Like a image slider.When i console.log the images i can see im getting all the arrays in modal but i don't know how to set them accordingly.

            I would appreciate some input how to go about the problem and what i am doing wrong.

            I have a parent component which is receiving the data from js-file.

            ...

            ANSWER

            Answered 2022-Jan-14 at 20:53

            The main issue here is that you are rendering a modal for each data element mapped but using a single showModal state that ends up toggling all of them open/close together.

            I suggest storing the the specific data you want to display in the modal into the state.showModal state, with an initial value null. Conditionally render a single Modal component.

            Source https://stackoverflow.com/questions/70713922

            QUESTION

            Retrieving a JSON body from DB gives extra special characters - Spring Boot
            Asked 2022-Jan-13 at 08:35

            We are saving a JSON response body in our Oracle DB which is later retrieved for the viewing purpose.

            This is the JSON saved in DB

            ...

            ANSWER

            Answered 2022-Jan-12 at 14:01

            QUESTION

            C code works on my PC but on grader system doesn't
            Asked 2022-Jan-08 at 21:30

            I have a problem with the code that I wrote. I have some test cases that have the results for the same. When I run these TC on my laptop the result is as expected, but when I upload code to my class grader only the first one doesn't work and says that the algorithm is not good or that there is some infinite loop. I think that the code is good; maybe I am wrong. What do you think?

            Test Case 1:

            ...

            ANSWER

            Answered 2022-Jan-08 at 21:19

            At least these problems:

            Parsing is dodgy

            Input is line orientated, but "%*c%*c%*c%*c%*c%*c%*c %[^ ] %[^:]%*c %[^\n]" readily can go pass the line.

            The best way to read a line from stdin is fgets(), then parse.

            Use width limits. Consider using " %n" to detect successful end of parsing.

            Source https://stackoverflow.com/questions/70636067

            QUESTION

            EXPORT_SYMBOL macro is giving conflicting types error
            Asked 2021-Dec-27 at 14:48

            I am trying to export a symbol to the kernel. But I am getting the below error. My linux version is 5.4.2,

            ...

            ANSWER

            Answered 2021-Dec-27 at 14:48

            The issue is with the use of user-defined data types. Instead of unsigned int, I have used UInt32, which is user-defined.

            Source https://stackoverflow.com/questions/70388244

            QUESTION

            How to add 2 numbers together that are of different lengths in x86 linux nasm assembly
            Asked 2021-Nov-17 at 18:07

            I'm very new to assembly and having difficulties in getting basic calculations to work with different length numbers.

            So this is my adding code, that works with numbers that are 3 or less characters long. for as long as both are the same length. for example 123 + 123 works just fine and outputs 246. But 12 + 123 does not work and it outputs 253 as the answer. How would I be able to get this working with different length numbers?

            ...

            ANSWER

            Answered 2021-Nov-17 at 18:07
            • Your loop never does more than 3 iterations. If there's a final carry, you'll need an extra write to the destination.
            • If the code needs to deal with different length inputs, then you can't use the same offset ESI to address corresponding digits from both numbers.
            • And neither can you use that same ESI to store the output since you could need one extra position to the left.
            • About answ resb 8, summing a couple of 3-digit numbers can at most produce a 4-digit sum.

            Below is one of the many solutions to this question.

            Source https://stackoverflow.com/questions/69974241

            QUESTION

            If a user visit 5 pages on the website display popup message
            Asked 2021-Nov-14 at 14:37

            I am working on one project in which I want to show

            1. If a user visits 5 pages on the website display a popup
            2. If a user stays 2 min on the website display a popup
            3. If the user closes the popup then does not show the popup again.

            The only problem is if a user visits 5 pages. In my code, if the user visits the home page 5 times it displays the popup and it is not working if the user visits 5 other pages.

            What I want "If the user visits 5 pages it can be any page on the website display the popup"

            Here is the code...

            ...

            ANSWER

            Answered 2021-Nov-14 at 14:37

            Using the storage API is simpler than using cookies. You can extend the timer with a counter

            Source https://stackoverflow.com/questions/69963070

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install alen

            Alen should work on most Unix systems, and Windows 10. If someone asks me to, I might add Windows 7 and 8 support. The easiest way to get it is to download the latest release from the releases page (binaries are not yet available for Windows). Alternatively, you can download the source code from this repo and compile it yourself using cargo build --release.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            gh repo clone jakobnissen/alen

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            git@github.com:jakobnissen/alen.git

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