segway | Application for semi-automated genomic annotation | Genomics library

 by   hoffmangroup Shell Version: 3.0.3 License: GPL-2.0

kandi X-RAY | segway Summary

kandi X-RAY | segway Summary

segway is a Shell library typically used in Artificial Intelligence, Genomics applications. segway has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

The free Segway software package contains a novel method for analyzing multiple tracks of functional genomics data. Our method uses a dynamic Bayesian network (DBN) model, which enables it to analyze the entire genome at 1-bp resolution even in the face of heterogeneous patterns of missing data. This method is the first application of DBN techniques to genome-scale data and the first genomic segmentation method designed for use with the maximum resolution data available from ChIP-seq experiments without downsampling. Our software has extensive documentation and was designed from the outset with external users in mind. Researchers at other universities and institutes have already installed and used Segway for their own projects. Please see the following URL for information, installation, and support:
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              segway has a low active ecosystem.
              It has 9 star(s) with 6 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 96 open issues and 54 have been closed. On average issues are closed in 166 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of segway is 3.0.3

            kandi-Quality Quality

              segway has no bugs reported.

            kandi-Security Security

              segway has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              segway is licensed under the GPL-2.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              segway releases are available to install and integrate.

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            segway Key Features

            No Key Features are available at this moment for segway.

            segway Examples and Code Snippets

            No Code Snippets are available at this moment for segway.

            Community Discussions

            QUESTION

            Explain me delegation in Swift by a simple example
            Asked 2020-Jul-24 at 12:11

            I'm recently studying Swift. I create projects of varying complexity, but I still don't understand the essence of delegating. In my projects, I try to avoid it in every possible way. I watched various videos on this topic, read articles, but I could not understand the essence of delegation. Now I decided to devote some time to this and created a simple project to figure it out, but I still can't get it.

            I want to pass text when clicking on a button from FirstViewController to SecondViewController , but this code doesn't work, what is the reason? What am I doing wrong?

            ...

            ANSWER

            Answered 2020-Jul-24 at 12:11

            S0, as been told in comments:

            – It doesn't work because your VC1 is nil in VC2

            – It is bad practice to make one VC delegate of another

            Simple theoretical example is:

            You have class DataParser that loads some data from internet, doing parsing, making data to be treated as your models, saving it to local storage. It takes time. And your VC should present this data after all preparations done.

            After job finished class DataParser should notify VC that it's done with data and VC is welcomed to show it.

            Of course VC should "show" their interest, by implementing:

            Source https://stackoverflow.com/questions/63072457

            QUESTION

            Creating new column based on multiple different values
            Asked 2020-Jan-13 at 06:23

            I have current code below that creates a new column based on multiple different values of a column that has different values representing similar things such as Car, Van or Ship, Boat, Submarine that I want all to be classified under the same value in the new column such as Vehicle or Boat.

            Code with Simplified Dataset example:

            ...

            ANSWER

            Answered 2020-Jan-13 at 04:20

            QUESTION

            Why is my fragment *sometimes* blank when I return to it via NavController.navigateUp()?
            Asked 2019-Aug-07 at 18:07

            When returning to IpFragment via navigateUp() it sometimes is blank, when it should be showing a couple simple textviews. Sometimes it renders correctly, but when it fails, the only error seems unrelated.

            The fragment which appears blank when returning to it:

            ...

            ANSWER

            Answered 2019-Aug-07 at 18:07

            Ok, so quickly after posting this question I fixed it. I referred to this post to fix the error I was getting: Android "Only the original thread that created a view hierarchy can touch its views.". and I changed onSpeakCommandReceived() to:

            Source https://stackoverflow.com/questions/57399944

            QUESTION

            How do I use user input, obtained through a function, to alter global variables?
            Asked 2019-May-25 at 04:07

            I have a global variable that needs to be altered by user input generated by a function.

            I'm trying to make a Zork style text game and want the character name, input by the user during a character creation function, to alter a global variable.

            I've been able to create a class to store character information and been able to display most of the information in the class on a mock command prompt I have appear when input options are available to the user.

            I use a global variable to define the character's name until the character creation stage. I use the 'global' keyword in the creation() function to alter the 'name' variable with user input.

            When the prompt is ready to be used it still only displays the name as 00 instead of the input generated during the creation() function

            I am exceedingly novice. Any advice, tips or direction would be cherished.

            ...

            ANSWER

            Answered 2019-May-25 at 03:29

            Ahhh, took a little bit, but I think I found the problem.

            You initialize Player 1 using the name variable before calling Creation(), where you change the global name variable, so Player1 is created with the original name “00.”

            Move the line:

            Player1 = Character(name, 100, 100, 1, 0)

            Put it after Creation() at the bottom but before segway()

            Python more or less executes any unindented code (code that isn’t in a function, class, etc.) from top to bottom.

            So, moving from top to bottom in your program, it sets name to “00”, then creates Player1 with the original name, then calls Intro(), Creation() (which changes the name to t00n), and finally segway().

            Source https://stackoverflow.com/questions/56301382

            QUESTION

            How to make sense of the continuous_state vector?
            Asked 2019-May-23 at 16:06
            Background

            I am trying to balance a mobile inverted pendulum (i.e. segway).

            For the simulation, I created a simple robot that involves a pole attached to a cylinder (wheel) through a revolute joint.

            Question

            After constructing my MIP plant, plant.num_positions() returns 8 and plant.num_velocities() returns 7, i.e. the total continuous_state size is 15

            1. How do I make sense of this large number of states?
            2. I suppose one of these represents the angle that the pole makes with the vertical. How do I find that?
            3. Also, why is num_positions() not equal to num_velocities()?
            ...

            ANSWER

            Answered 2019-Apr-16 at 16:58

            By default, the urdf/sdf parser adds the system with a quaternion-based floating base. This floating base joint has 7 position variables (x,y,z + quaternion) and 6 velocities (xdot, ydot, zdot, + spatial velocity). You should use the multibody API to get the variable in the right order.

            You can add a joint between the world link and your base (either in the urdf/sdf or in your code) to replace that implied floating joint with e.g. a prismatic joint at the base.

            There are lots of examples of how to simulate it, in drake, but also at http://underactuated.mit.edu

            Source https://stackoverflow.com/questions/55711025

            QUESTION

            Applying PID Controller for trajectory planning algorithm
            Asked 2019-Jan-14 at 16:55

            I am developing a path planning algorithm for a Segway robot. After running the algorithm path to the goal is obtained in form of (x, y, theta) coordinates. The hardware and sensor noises causing much trouble in following the path and error is accumulating. I thought of applying PID Control. I need to set the steering angle to the direction of movement by calculating the cross track error.

            1) How to calculate the CTE with original co-ordinate (x1, y1, theta1) and current position (x1', y1', theta1')?

            2) How to select values for Kp, Ki and Kd for this scenario?

            Additional information: Development environment is Android studio.

            ...

            ANSWER

            Answered 2019-Jan-14 at 15:14

            You can find the Kp, Ki, Kd values either experimentally or with a method like Ziegler-Nichols Method which would be more accurate.

            Experimentally, you can try:

            1. Set all gains to 0.
            2. Increase Kd until the system oscillates.
            3. Reduce Kd by a factor of 2-4.
            4. Set Kp to about 1% of Kd.
            5. Increase Kp until oscillations start.
            6. Decrease Kp by a factor of 2-4.
            7. Set Ki to about 1% of Kp.
            8. Increase Ki until oscillations start.
            9. Decrease Ki by a factor of 2-4.

            Source https://stackoverflow.com/questions/54147301

            QUESTION

            jqgrid dropdown list not loaded after posting to server or page refresh
            Asked 2018-Jul-07 at 22:19

            I am new to using JQGrid and after lot of research I am posting this question.

            I am populating a drop down list into jqgrid through dataurl and built the html with buildselect function.

            The first time when I try to add a new row it works perfectly fine and the dropdown is created and options are populated.

            However after filling the grid row and clicking save, I am posting the data to a MVC action method (PostTestData) and save the posted values in a session variable. When I inspect the posted data I can see that the selected value as a string datatype.

            From the PostTestData I am redirecting to another action method GetTestData which will load the saved data back into the grid, this is loading all the text values correctly but the drop down is showing as an empty cell and is not pre-selecting the selected value.

            The built select function is not called at this point and is called only after I click the empty cell and a new dropdown is created. I am struggling how to get back the dropdown after post and grid reload.

            I am pasting my actual code below

            ...

            ANSWER

            Answered 2018-Jul-07 at 22:19

            I fixed this by removing the formatter: 'select' in the colModel for that particular column and when the grid refreshed it showed the correct value.

            Source https://stackoverflow.com/questions/51177299

            QUESTION

            UIPageViewController Xamarin
            Asked 2018-Mar-16 at 03:25

            I need to implement a simple UIPageViewController using Xamarin in Visual Studio 2017 for mac.

            As the documentation says in https://developer.xamarin.com/api/type/MonoTouch.UIKit.UIPageViewController/ I need to connect the previous and next views, using UIPageViewControllerDataSource.GetNextViewController and UIPageViewControllerDataSource.GetPreviousViewController from the UIPageViewControllerDataSource delegate, but I'm not clear where should I do that, nor I see any where to do that using the storyboard designer.

            The idea to use the UIPageViewController is to add a quick tutorial of 4 pages before advancing to another View, at the last view of the UIPageViewController there would be a button that calls the segway to the next page.

            ...

            ANSWER

            Answered 2018-Mar-16 at 03:25

            You can add a UIPageViewController in the Storyboard. Configure the style in the Properties window => Widget(Navigation, Transition Style, Spine Location).

            Then you can add the DataSource in the corresponding CS file. Add the firstly shown UIViewController using: SetViewControllers(new UIViewController[] { viewController }, UIPageViewControllerNavigationDirection.Forward, true, null);. Please notice that when you set the Spine Location to Mid, this array should contain at least two UIViewControllers. If not, add just one.

            but I'm not clear where should I do that, nor I see any where to do that using the storyboard designer.

            When you want to navigate to the next page, the event GetNextViewController() will fire(i.e. first page - second page). And you should return which Controller will show in this event. Also GetPreviousViewController() means which Controller you want to show when navigate back. Here is my sample:

            Source https://stackoverflow.com/questions/49310798

            QUESTION

            IM trying to use SegmentedControll instead of Buttons for changing views
            Asked 2018-Mar-07 at 16:02

            by default my "FirstSlection" is selected until I press "secondSelection" the Segway won't trigger is there a way around ?

            librarian - User - Signup here changing views from segwayIdentif

            ...

            ANSWER

            Answered 2018-Mar-07 at 15:36

            You can call the the action directly when view controller loads for the default selected item , then the trigger of segmented control selection will handle it in future clicks (when you manually click it)

            Source https://stackoverflow.com/questions/49155641

            QUESTION

            Re-arrange an array with nested object (JS)
            Asked 2017-Sep-05 at 07:27

            I receive the following response of activities from a datasource. These have unique start times, and can belong to the same product.

            Currently the Product Information object is nested within the activity. I have tried unsuccessfully to "re-arrange" and group the information.

            The structure I require is to have a Product (productCode) with activities with the same product code in object within the Product. eg. "productCode":"PTFTVD" "activities":[{activity 1, activity 2 etc}]

            ...

            ANSWER

            Answered 2017-Sep-05 at 06:48

            Basically a switching of data is grouped in two stages:

            1. Group the product,
            2. Collect activities for a product.

            For 1, you need a searchable data structure, like an object or a Map, where you have a key and data collected.

            Here, you could use the productCode as key and take the data of product as new values. Add then a property for collecting the activities.

            Use an array for the result set and push a new product to the result set, while the product is still accessable with the key in the object.

            Now go to 2. and collect all data and assign it to the activities array.

            Voila!

            Source https://stackoverflow.com/questions/46048206

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

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