sns | Analysis pipelines for sequencing data | Genomics library

by igordot Shell Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | sns Summary

sns is a Shell library typically used in Artificial Intelligence, Genomics applications. sns has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Generate a sample sheet based on a directory of FASTQ files. Specify the reference genome. Run the analysis using a specific route. Check if the jobs are submitted and running. For more details, check the full documentation at:

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Support

sns has a low active ecosystem.

It has 50 star(s) with 16 fork(s). There are 8 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 5 have been closed. On average issues are closed in 1 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of sns is current.

Quality

sns has 0 bugs and 0 code smells.

Security

sns has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

sns code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

sns is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

sns releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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sns Key Features

No Key Features are available at this moment for sns.

sns Examples and Code Snippets

No Code Snippets are available at this moment for sns.

Community Discussions

Trending Discussions on sns

Getting Error 0 when plotting boxplot of a filtered dataset

I am trying to do categorical analysis I want to convert count values to percentage and I am getting an error

How to add median and IQR to seaborn violinplot

Pandas agg define metric based on data type

Heatmap error :'NoneType' object is not callable when using with dataframe

Adding columns & values per group occurrence in pandas after filtering

Can I send messages to an SNS topic in a different region using the SDK?

Google Colab ModuleNotFoundError: No module named 'sklearn.externals.joblib'

Seaborn heatmap change date frequency of yticks

How to create a subplot for each group of a pandas column

QUESTION

Getting Error 0 when plotting boxplot of a filtered dataset

Asked 2022-Mar-11 at 15:48

I am working on the Kaggle: Abalone dataset and I am facing a weird problem when plotting a boxplot.

...

ANSWER

Answered 2022-Mar-10 at 10:38

If you want a box plot per value of a categorical column I suggest:

Source https://stackoverflow.com/questions/71422431

QUESTION

I am trying to do categorical analysis I want to convert count values to percentage and I am getting an error

Asked 2022-Mar-01 at 19:12

My code is:

...

ANSWER

Answered 2022-Feb-28 at 14:09

sns.countplot doesn't support an estimator= parameter. However, you could create a bar plot to simulate a count plot. As a bar plot needs a numeric y-value, a workaround is to use an array of ones.

Source https://stackoverflow.com/questions/71283530

QUESTION

How to add median and IQR to seaborn violinplot

Asked 2022-Jan-14 at 18:59

I want to add the median and IQ values to the violin plot. However, I didn't find its argument.

...

ANSWER

Answered 2022-Jan-14 at 18:59

If you look at the lines in ax you can see that they contain the coordinates of the quartile and median lines (see below)

So we could just take the non-zero element from the first array in each line, and the first element of the second array to get the x and y, and use the y as the text value.

Source https://stackoverflow.com/questions/70714905

QUESTION

Pandas agg define metric based on data type

Asked 2021-Dec-16 at 12:34

For pandas agg, is there a way to specify the aggregation function based on the data type? For example, all columns of type object get "first", all floats get "mean", and so on? So as to avoid having to type out all the columns with their respective aggregating functions.

Sample data:

...

ANSWER

Answered 2021-Dec-16 at 12:25

def a(x):
    if x.dtype == np.dtype('float64'):
        dict[x.name] = "mean"
    elif x.dtype == np.dtype('object'):
        dict[x.name] = "first"


dict = {}

df = df.apply(a)

iris.agg(dict)

Source https://stackoverflow.com/questions/70364384

QUESTION

Heatmap error :'NoneType' object is not callable when using with dataframe

Asked 2021-Dec-05 at 09:37

I have this issue with heatmap from seaborn. I don't know how, but seaborn.heatmap() refuses to take in dataframe, it instead show the mentioned error. Seaborn, matplotlib and pandas is up-to-date and I'm using python 3.10 on Visual Studio. The code is just a sample code from seaborn.heatmap itself:

...

ANSWER

Answered 2021-Dec-05 at 09:37

Use Python 3.9 (or 3.8, 3.7, 3.6) as it seems like both pandas and plt are not quite ready to be used with Python 3.10:

Source https://stackoverflow.com/questions/70232617

QUESTION

Adding columns & values per group occurrence in pandas after filtering

Asked 2021-Dec-03 at 09:52

I have a df

...

ANSWER

Answered 2021-Dec-03 at 09:52

Use cut with crosstab and add DataFrame.add_prefix:

Source https://stackoverflow.com/questions/70212172

QUESTION

Can I send messages to an SNS topic in a different region using the SDK?

Asked 2021-Nov-30 at 22:12

I was wondering, is it possible to send messages to an SNS topic that is in a different region? Asking because can't find any leads through my research.

Basically I want to be able to send messages from the EU region to an SNS topic that has its region set to us-east-1 and that SNS will then publish the message to its subscribers

...

ANSWER

Answered 2021-Oct-16 at 01:43

is it possible to send messages to an SNS topic that is in a different region?

Yes, of course.

When you’re using the SDK, just set the region to us-east-1.

Nothing is stopping you from sending messages to an SNS topic in another region.

You can send messages to an SNS topic from anywhere on the internet as long as you call the correct regional endpoint for the topic (which is determined by the region you set in the SDK).

Source https://stackoverflow.com/questions/69592021

QUESTION

Google Colab ModuleNotFoundError: No module named 'sklearn.externals.joblib'

Asked 2021-Nov-30 at 14:20

My Initial import looks like this and this code block runs fine.

...

ANSWER

Answered 2021-Nov-30 at 14:20

For the second part you can do this to fix it, I copied the rest of your code as well, and added the bottom part.

Source https://stackoverflow.com/questions/70163883

QUESTION

Seaborn heatmap change date frequency of yticks

Asked 2021-Nov-29 at 17:45

My problem is similar to the one encountered on this topic: Change heatmap's yticks for multi-index dataframe

I would like to have yticks every 6 months, with them being the index of my dataframe. But I can't manage to make it work.

The issue is that my dataframe is 13500*290 and the answer given in the link takes a long time and doesn't really work (see image below).

This is an example of my code without the solution from the link, this part works fine for me:

...

ANSWER

Answered 2021-Nov-29 at 07:40

Here are a couple ways to adapt that link for your use case (1 label per 6 months):

Either: Show an empty string except on Jan 1 and Jul 1 (i.e., when %m%d evals to 0101 or 0701)

Source https://stackoverflow.com/questions/70148757

QUESTION

How to create a subplot for each group of a pandas column

Asked 2021-Nov-07 at 13:49

In titanic dataset, I need to create a chart that shows the percentage of passengers for all class who survived. Also it should have three pie charts. class 1 survived and not-survived, class 2 survived and not-survived, class 3.

How can make this happen? I already tried this type of code but it produces wrong values.

...

ANSWER

Answered 2021-Nov-07 at 10:23

Code:

Source https://stackoverflow.com/questions/69865648

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install sns

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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