alan | Alignment viewer for linux terminal | Genomics library

by mpdunne Shell Version: 2.1.1 License: No License

X-Ray Key Features Code Snippets(2)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | alan Summary

alan is a Shell library typically used in Artificial Intelligence, Genomics applications. alan has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Alan is a simple, light command line alignment viewer, for viewing amino acid and DNA alignments in a linux terminal. It can be used for viewing FASTA or Clustal format alignment files, and relies on just a few standard unix packages. Current Alan version (2.1.0):

Support

Quality

Security

License

Reuse

Support

alan has a low active ecosystem.

It has 68 star(s) with 7 fork(s). There are 4 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 0 have been closed. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of alan is 2.1.1

Quality

alan has no bugs reported.

Security

alan has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

alan does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

alan releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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alan Key Features

No Key Features are available at this moment for alan.

alan Examples and Code Snippets

Compute the SSSim similarity between two images .

python

Lines of Code : 125

License : Non-SPDX (Apache License 2.0)

Copy

def ssim_multiscale(img1,
                    img2,
                    max_val,
                    power_factors=_MSSSIM_WEIGHTS,
                    filter_size=11,
                    filter_sigma=1.5,
                    k1=0.01,

calculate the alan pha .

java

Lines of Code : 4

License : No License

Copy

public double alan_hesapla()
    {
        return en * boy;
    }

Community Discussions

Trending Discussions on alan

Why is NULL considered a special case in SQL?

MS Access SQL query - Count records until value is met

JavaScript: Comparing Two Arrays and Replacing Objects

Unable to connect with Atlas cluster using PyMongo

Read JSON string outside of dict

What does the following bash command mean?

Create list from nested struct swift ui

How to transform nested array to a flat array of nodes PHP?

elasticsearch - unique dates from datetime

How to freeze an iteration in loop for printing python

QUESTION

Why is NULL considered a special case in SQL?

Asked 2021-Jun-07 at 12:29

Assume the following database table:

Accounts

id externalId firstName lastName 4c8e49a6-b148-4125-9352-c2effda744b8 null Alan Turing 9bb67137-07cf-413b-8f7e-d710a9c52c19 null Bill Gates 7510fe8e-a976-4258-bf5a-a314373f6743 'abc' Charles Babbage 62222be0-5e85-4333-9683-7b2de03073c5 'xyz' Dennis Richie

The following query returns the following results:

...

ANSWER

Answered 2021-Jun-07 at 12:29

This is how NULL is defined. Period. It means "unknown value" semantically, not "missing value". So NULL != 'abc' returns NULL because the value is not known. And WHERE only returns expressions that explicitly evaluate to "true".

Your real question is why SQL Server doesn't support a NULL safe comparison operator. So the same Standard that defines the behavior of NULL also defines IS DISTINCT FROM to do what you want:

Source https://stackoverflow.com/questions/67870730

QUESTION

MS Access SQL query - Count records until value is met

Asked 2021-Jun-06 at 11:19

I have an Access query (qr1) that returns the following data:

dateField stringField1 stringField2 booleanField 11/09/20 17:15 John Nick 0 12/09/20 17:00 John Mary -1 13/09/20 17:30 Ann John 0 13/09/20 19:30 Kate Alan 0 19/09/20 19:30 Ann Missy 0 20/09/20 17:15 Jim George 0 20/09/20 19:30 John Nick 0 27/09/20 15:00 John Mary -1 27/09/20 17:00 Ann John -1 27/09/20 19:30 Kate Alan 0 28/09/20 18:30 Ann Missy -1 03/10/20 18:30 Jim George -1 04/10/20 15:00 John Nick 0 04/10/20 17:15 John Mary 0 04/10/20 20:45 Ann John 0 05/10/20 18:30 Kate Alan 0 17/10/20 15:00 Jim George 0 17/10/20 17:15 John Nick 0 18/10/20 15:00 John Mary -1 18/10/20 17:15 Ann John 0

Notes:

The string data may by repetitive or not.
The date data are stored as string. I use a function to convert it as date.

...

ANSWER

Answered 2021-Jun-02 at 22:13

One obvious problem is:

Source https://stackoverflow.com/questions/67813142

QUESTION

JavaScript: Comparing Two Arrays and Replacing Objects

Asked 2021-Jun-06 at 00:27

I have two arrays that I would like to compare against each other based on the Username and create a new array that includes EmployeeName

...

ANSWER

Answered 2021-Jun-06 at 00:20

You can make a Map to store information about each employee such as EmployeeName at each key (being the Username). Then you can use .map() on your first array and use the OrderBy key to grab the associated employee data from the map you made, which you can then spread into the resulting new object:

Source https://stackoverflow.com/questions/67854852

QUESTION

Unable to connect with Atlas cluster using PyMongo

Asked 2021-May-30 at 21:32

I have been trying to make Pymongo work with my free atlas cluster since a while now, but just reaching errors like:

...

ANSWER

Answered 2021-May-30 at 21:32

Atlas clusters use SRV records to determine the DNS records for each shard / replicaset.

As such you need to connect using a connection string starting mongodb+srv://.

Source https://stackoverflow.com/questions/67765433

QUESTION

Read JSON string outside of dict

Asked 2021-May-28 at 19:02

I have the following statement in my python code, how can I access the value (Warner Bros) of key "string" :

...

ANSWER

Answered 2021-May-28 at 18:40

The problem is like the python error message says. Python can't find the element with index 4 because the array only has 4 elements and array indices start with 0. So to access the last element in the array you would have to use

Source https://stackoverflow.com/questions/67743934

QUESTION

What does the following bash command mean?

Asked 2021-May-25 at 14:40

The command-

...

ANSWER

Answered 2021-May-25 at 14:33

The explanation you quoted from the code is remarkably good. I wish every script I read (or wrote!) was documented so well.

In the 3rd step it states f - designates the target file as stdout, but there is nothing in output right now, while creating archive 🤔, from where is the name of file supplied?

There is no file name. The archive data are written to stdout, the process's standard output stream. If that were not piped into another program then it would be displayed on the screen.

In the 8th step it states, it reads data from stdin, but I didn't give any input, is there any input left in the stream?

The output (to its stdout) of the first tar command is piped into (the stdin of) the second tar command, as mentioned at step 4 of the documentation. You can't give the second tar any input directly, because it is reading its input from the pipe, not the keyboard or any regular file.

Source https://stackoverflow.com/questions/67689847

QUESTION

Create list from nested struct swift ui

Asked 2021-May-23 at 21:46

Im testing a list picker in my IOS app which allows users to choose a playlist. The example compiles however the preview is not what is expected. From the JSON file you can see that there is different data in each collection however in my list it only seems to pick the 1st value and repeat it for the size of the collection. What am I missing from my List, I thought the syntax was List( your collection, identifier: .name of identifier in your struct. its basically printing the same index upon each entry.

...

ANSWER

Answered 2021-May-23 at 21:46

Both entities in your JSON data have the same id right now: 1234.

Because your List is using .id to differentiate between items, unexpected things can happen with entities with duplicate ids.

To fix, this, make sure that your entities have unique id fields.

Source https://stackoverflow.com/questions/67664351

QUESTION

How to transform nested array to a flat array of nodes PHP?

Asked 2021-May-23 at 07:37

I have a nested array with a structure as detailed below.

It is an org chart where an employ could have other employees related:

...

ANSWER

Answered 2021-May-23 at 00:17

You can make a recursive function, like this:

Source https://stackoverflow.com/questions/67654668

QUESTION

elasticsearch - unique dates from datetime

Asked 2021-May-21 at 07:08

I have the following data in elasticsearch

...

ANSWER

Answered 2021-May-21 at 07:07

You can use Date-Histogram for this.

Source https://stackoverflow.com/questions/67632005

QUESTION

How to freeze an iteration in loop for printing python

Asked 2021-May-20 at 00:07

if i have:

...

ANSWER

Answered 2021-May-20 at 00:07

What you can do:

Source https://stackoverflow.com/questions/67612280

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install alan

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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