rocker | R configurations for Docker | Continuous Deployment library
kandi X-RAY | rocker Summary
kandi X-RAY | rocker Summary
This repository contains Dockerfiles for different Docker containers of interest to R users.
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QUESTION
I'm running gitlab-ce on-prem with min.io as a local S3 service. CI/CD caching is working, and basic connectivity with the S3-compatible minio is good. (Versions: gitlab-ce:13.9.2-ce.0
, gitlab-runner:v13.9.0
, and minio/minio:latest
currently c253244b6fb0
.)
Is there additional configuration to differentiate between job-artifacts and pipeline-artifacts and storing them in on-prem S3-compatible object storage?
In my test repo, the "build" stage builds a sparse R package. When I was using local in-gitlab job artifacts, it succeeds and moves on to the "test" and "deploy" stages, no problems. (And that works with S3-stored cache, though that configuration is solely within gitlab-runner
.) Now that I've configured minio as a local S3-compatible object storage for artifacts, though, it fails.
ANSWER
Answered 2021-Jun-14 at 18:30The answer is to bypass the empty-string test; the underlying protocol does not support region-less configuration, nor is there a configuration option to support it.
The trick is able to work because the use of 'endpoint'
causes the 'region'
to be ignored. With that, setting the region to something and forcing the endpoint allows it to work:
QUESTION
I’m looking for the proper or available way to do artifact handling and storage
I’m using Gitlab CI/CD as my terraform planning and deployment method. I have two stages: plan
, and apply
.
In stage ‘plan’ it creates the plan file per project directory, and at the end it stores the artifacts of each project directory. So the plan files that were created, and a file that contains a list of directories that were run.
In order for users to apply the changes, they have to submit a merge request, and once approved, it’ll against the main branch.
This runs the stage apply
, where ideally what I want it to do is pull down the artifact and apply.
Except because now it’s a pipeline running on the main branch, there’s no artifact for it to pull down.
...ANSWER
Answered 2021-May-18 at 14:38Just confirming, this was my answer:
Also, is generic_packages an option to use for you ? – Nicolas Pepinster
When using the generic package, I used an ID system that included the branch name, and a version number that was the pipeline ID (to get unique). And then in the pipeline, I can CURL to pull the packages from the repo, sort by the version number, and pull down "latest" (without it being latest) in my apply
stage.
QUESTION
I'm building a WebApp with a SQL DB as Backend. I'm Deploying the both parts on Azure, as Azure Webapp and SQL Server.
The SQL server is sercured with Azure AD (AAD). So only Users in a Group can access the DB.
So I'm trying to setup a workflow where the Webapp login the user and collect his Access token. And then uses the token to Query the SQL server.
I've registreted the App in AAD, where it is authorized to read the user ID and impersonate as the user.
I've the following code which is working local. But I can't get it to work deployed locally in a Docker Image.
...ANSWER
Answered 2021-May-17 at 16:06Connecting to SQL Server with an OAuth token requires use of a pre-connection attribute (basically a pointer to the token string). There is an open feature request at the odbc Github repo for this. I encourage you to upvote it, hopefully if it's popular enough it will get implemented.
QUESTION
I'm having problems with a package that may be solved by rolling back to bionic. With the new modular rocker system it seems like the following would work based on their build on 18.04. When I build this with a hello world shiny app I just get shiny_server exited with code 0.
...ANSWER
Answered 2021-May-14 at 01:33I dont know why but separating the install scripts into separate layers makes an image that works.
QUESTION
In java8 we are using Rocker template with plugin com.fizzed:rocker-gradle-plugin:0.24.0. We are trying upgrade to Java 11,but compilation is failing with the exception **> Task :generateRockerTemplateSource FAILED FAILURE: Build failed with an exception.
- What went wrong: Execution failed for task ':generateRockerTemplateSource'.
Unsupported javaVersion [11.]**
Has anyone used rocker template in Java11,please help.
...ANSWER
Answered 2021-May-07 at 15:21According to their GitHub page, "Rocker is a Java 8 optimized (runtime compat with 6+), near zero-copy rendering, speedy template engine [...]", so no, I don't think it does. You might want to open an issue (if one doesn't exist yet).
QUESTION
I want to use H2O's Sparkling Water on multi-node clusters in Azure Databricks, interactively and in jobs through RStudio and R notebooks, respectively. I can start an H2O cluster and a Sparkling Water context on a rocker/verse:4.0.3
and a databricksruntime/rbase:latest
(as well as databricksruntime/standard
) Docker container on my local machine but currently not on a Databricks cluster. There seems to be a classic classpath problem.
ANSWER
Answered 2021-Apr-22 at 20:27In my case, I needed to install a "Library" to my Databricks workspace, cluster, or job. I could either upload it or just have Databricks fetch it from Maven coordinates.
In Databricks Workspace:
- click Home icon
- click "Shared" > "Create" > "Library"
- click "Maven" (as "Library Source")
- click "Search packages" link next to "Coordinates" box
- click dropdown box and choose "Maven Central"
- enter
ai.h2o.sparkling-water-package
into the "Query" box - choose recent "Artifact Id" with "Release" that matches your
rsparkling
version, for meai.h2o:sparkling-water-package_2.12:3.32.0.5-1-3.0
- click "Select" under "Options"
- click "Create" to create the Library
- thankfully, this required no changes to my Databricks R Notebook when run as a Databricks job
QUESTION
I have build docker image from below:
...ANSWER
Answered 2021-Apr-12 at 22:18I faced same issue & it resolved by just replace the
QUESTION
I was playing with "which" and "echo" commands and I got this strange "not found" at the end of some outputs when using "which", "echo" shows no issue.
...ANSWER
Answered 2021-Mar-08 at 13:40As you can see in the man page of which
this command:
Name
which - shows the full path of (shell) commands.
The command do not index and show all the files in the filesystem and this is the reason you get those results.
QUESTION
Pointers in C is a very hard subject for me. This is part of a code from my homework and it reproduces the problem that I am having.
...ANSWER
Answered 2021-Feb-28 at 00:49The problem that you might be misunderstanding is that calling free(temp)
releases the object in memory pointed to by temp
- it doesn't really have anything to do with the temp
variable itself. temp
will be deallocated once the function returns. In fact, declaring temp
itself might even be unnecessary.
QUESTION
I am deploying Shiny-server in container. By default Shiny-server listens on port 3838, here is piece from shiny-server.conf
...ANSWER
Answered 2021-Feb-26 at 20:52Add
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