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QUESTION
Labels of variables (using Labelled package) do not carry over when subsetting the survey using (subset of Survey package), and I end up having to manually insert labels into the gtsummary function.
...ANSWER
Answered 2022-Apr-03 at 17:02subset
removes the labelled attributes, subset your data first, label it, and then pass to gtsummary
QUESTION
I followed an online tutorial, but was able to scrape different websites. I cannot get the article headlines to show up. I am not sure if it is a problem with my return function or my HTML file. This is the code for the views.py file
...ANSWER
Answered 2022-Mar-28 at 23:42In your views.py, change your render
statement to this:
QUESTION
df_nhpi %>%
select(AGE, SEX, MAR_STAT, HEIGHT, WEIGHT, BMI, HTN, HTNMED, MI, Smoking, COPD, CANCER, DIABETES) %>%
tbl_summary(by = SEX,
label = list(MAR_STAT ~ 'Marital Status',
HTN ~ 'Hypertension',
HTNMED ~ 'Hypertension Medication',
MI ~ 'Heart Attack',
Smoking ~ 'Smoking Status',
COPD ~ 'Chronic Obstructive Pulmonary Disease'),
type = list(c("HTN","HTNMED", "MI", "COPD", "CANCER") ~ "categorical"),
missing = "ifany",
missing_text = "Unknown",
statistic = list(all_continuous() ~ "{mean} ({sd})",
all_categorical() ~ "{n} ({p}%)"),
digits = all_continuous() ~ 2, percent = "column") %>%
add_stat_label() %>%
add_p(test = all_continuous() ~ "t.test", pvalue_fun =
function(x) style_pvalue(x, digits = 3)) %>%
bold_p() %>%
modify_caption("**Table 1. Baseline Characteristics**") %>% bold_labels()
...ANSWER
Answered 2022-Mar-23 at 01:25I prepared two solutions that both report the proportion of missing data. Hopefully one of them works for you!
QUESTION
I have a dataframe which looks somthing like this:
...ANSWER
Answered 2021-Sep-26 at 12:46You could use a combination of pandas.get_dummies
and join
:
QUESTION
I'm trying to extract the elements of a list to turn it into a CSV file. I have a long list containing string elements. Example:
...ANSWER
Answered 2021-Aug-31 at 06:14You can also try something like this:
QUESTION
I have a string and a dataframe below:
...ANSWER
Answered 2021-Jul-27 at 03:48One way using pd.DataFrame.applymap
:
QUESTION
i have a table as follows
pid patient_name age sex dm htn ckd 1 one 10 m 1 0 1 2 two 15 m 1 1 1 3 three 30 m 1 0 1 4 four 40 f 1 0 1 5 five 50 f 1 0 1 6 six 60 f 1 0 1 7 seven 70 m 1 0 1i need output counts as follows for male patients
ranges dm_count htn_count ckd_count 80+ 0 0 0 20-29 0 0 0 50-59 0 0 0 under 20 2 1 2 30-39 1 0 1 40-49 0 0 0 70-79 1 0 1 60-69 0 0 0below i have mentioned the query i have used
...ANSWER
Answered 2021-Jul-17 at 06:55I'm assuming your question is "how do I add the count columns for dm, htn and ckd?
Select them in the inner query and use SUM on them rather than COUNT in the outer query
QUESTION
In the code below, i'm trying to replace mean instead of missing values but i can't get a result for my attempts because this data includes special characters which is "?". When there is no question marks in the data this code works data.fillna(data.mean())
. When i tried to impute method, i got the following error:
ValueError: Cannot use mean strategy with non-numeric data: could not convert string to float:
Also this data includes string columns with missing values, how can i fix missing values in the string columns (column rbc for example)?
here is my data: https://easyupload.io/te2mbc
...ANSWER
Answered 2021-May-16 at 05:44The fact that you have '?' characters in columns 'sod' and 'pot' make pandas parse those columns as strings, so even if you do
QUESTION
I am trying to find the Exact Match in my dataset using the CEM library in R. Here is my dataset given. https://docs.google.com/spreadsheets/d/1y_ZN_FW163R6ZpYRuDyOtUbKtSakgr-IBhpg-rZQQC8/edit?usp=sharing
I am using the following code but I am getting an error while running CEM function to find out the exact match.
...ANSWER
Answered 2021-Mar-16 at 16:52The problem is that there is almost no data at high levels of SOFA.score
. Here's the table of SOFA.score
by TXA
.
QUESTION
import tensorflow as tf
from tensorflow import keras
import pandas as pd
from sklearn.model_selection import train_test_split
import numpy as np
xi=pd.read_csv(r'/content/ckd_full.csv')
xi=xi.drop(columns=['sg','su','pc','pcc','pcv','rbcc','wbcc'])
y=xi[['class']]
y['class']=y['class'].replace(to_replace=(r'ckd',r'notckd'), value=(1,0))
x=xi.drop(columns=['class'])
x['rbc']=x['rbc'].replace(to_replace=(r'normal',r'abnormal'), value=(1,0))
x['ba']=x['ba'].replace(to_replace=(r'present',r'notpresent'), value=(1,0))
x['htn']=x['htn'].replace(to_replace=(r'yes',r'no'), value=(1,0))
x['dm']=x['dm'].replace(to_replace=(r'yes',r'no'), value=(1,0))
x['cad']=x['cad'].replace(to_replace=(r'yes',r'no'), value=(1,0))
x['pe']=x['pe'].replace(to_replace=(r'yes',r'no'), value=(1,0))
x['ane']=x['ane'].replace(to_replace=(r'yes',r'no'), value=(1,0))
x['appet']=x['appet'].replace(to_replace=(r'good',r'poor'), value=(1,0))
x[x=="?"]=np.nan
d=['age', 'bp', 'al', 'rbc', 'ba', 'bgr', 'bu', 'sc', 'sod', 'pot', 'hemo', 'htn', 'dm','cad', 'appet', 'pe', 'ane']
for i in d:
x[i] = x[i].astype(float)
x.fillna(x.median(),inplace=True)
xtrain, xtest, ytrain, ytest = train_test_split(x, y, test_size=0.025)
#begin the model
model=keras.models.Sequential()
model.add(keras.layers.Dense(150,input_dim = 17, activation=tf.nn.relu))
#model.add(keras.layers.Dropout(0.5))
model.add(keras.layers.Dense(100,input_dim = 17, activation=tf.nn.relu))
model.add(keras.layers.Dense(50,input_dim = 17, activation=tf.nn.relu))
model.add(keras.layers.Dense(10,input_dim = 17, activation=tf.nn.relu))
model.add(keras.layers.Dense(5,input_dim = 17, activation=tf.nn.relu))
model.add(keras.layers.Dense(1, activation=tf.nn.sigmoid))
model.compile(optimizer='adam', loss='binary_crossentropy', metrics=['accuracy']) # specifiying hyperparameters
xtrain_tensor = tf.convert_to_tensor(xtrain, dtype=tf.float32)
ytrain_tensor = tf.convert_to_tensor(ytrain, dtype=tf.float32)
model.fit(xtrain_tensor , ytrain_tensor , epochs=100, batch_size=128, validation_split = 0.15, shuffle=True, verbose=2) # load the model
#es = tf.keras.callbacks.EarlyStopping(monitor='accuracy', mode='min', verbose=1,patience=5)
model.save('NephrologistLite') # save the model with a unique name
myModel=tf.keras.models.load_model('NephrologistLite') # make an object of the model
...ANSWER
Answered 2020-Jul-11 at 09:35You have 1 record in row #403 of your dataset (on the 2nd cell) which is causing the NaN gradient problem. Just delete it from your dataset and you will be good to go.
In addition: I removed the input_dims from the hidden layers as it isn't necessary. Tried to keep the code as close as possible to your code.
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