canu | single molecule sequence assembler for genomes | Genomics library

 by   marbl C++ Version: v2.2 License: No License

kandi X-RAY | canu Summary

kandi X-RAY | canu Summary

canu is a C++ library typically used in Artificial Intelligence, Genomics applications. canu has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

            kandi-support Support

              canu has a low active ecosystem.
              It has 575 star(s) with 165 fork(s). There are 55 watchers for this library.
              It had no major release in the last 12 months.
              There are 19 open issues and 2156 have been closed. On average issues are closed in 15 days. There are 4 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of canu is v2.2

            kandi-Quality Quality

              canu has 0 bugs and 0 code smells.

            kandi-Security Security

              canu has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              canu code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              canu does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              canu releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.
              It has 316 lines of code, 20 functions and 4 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            canu Key Features

            No Key Features are available at this moment for canu.

            canu Examples and Code Snippets

            No Code Snippets are available at this moment for canu.

            Community Discussions


            Command not found error in snakemake pipeline despite the package existing in the conda environment
            Asked 2020-Jan-15 at 14:07

            I am getting the following error in the snakemake pipeline:



            Answered 2020-Jan-15 at 14:07

            When running a snakemake workflow, if certain rules are to be ran within a rule-specific conda environment, the command line call should be of the form


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install canu

            You can download it from GitHub.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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