assembly-stats | Get assembly statistics from FASTA and FASTQ files | Genomics library

by sanger-pathogens C++ Version: v1.0.1-docker1 License: Non-SPDX

X-Ray Key Features Code Snippets(3)Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | assembly-stats Summary

assembly-stats is a C++ library typically used in Artificial Intelligence, Genomics applications. assembly-stats has no bugs, it has no vulnerabilities and it has low support. However assembly-stats has a Non-SPDX License. You can download it from GitHub.

Get assembly statistics from FASTA and FASTQ files

Support

Quality

Security

License

Reuse

Support

assembly-stats has a low active ecosystem.

It has 92 star(s) with 22 fork(s). There are 20 watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 1 have been closed. On average issues are closed in 643 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of assembly-stats is v1.0.1-docker1

Quality

assembly-stats has 0 bugs and 0 code smells.

Security

assembly-stats has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

assembly-stats code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

assembly-stats has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

assembly-stats releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

It has 3056 lines of code, 259 functions and 19 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

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assembly-stats Key Features

No Key Features are available at this moment for assembly-stats.

assembly-stats Examples and Code Snippets

assembly-stats,Usage

C++

Lines of Code : 16

License : Strong Copyleft (GPL-3.0)

Copy

assembly-stats file.fasta another_file.fastq

$ assembly-stats
usage: stats [options] 

Reports sequence length statistics from fasta and/or fastq files

options:
-l 
    Minimum length cutoff for each sequence.
    Sequences shorter than the cutoff

assembly-stats,Usage,Example

C++

Lines of Code : 11

License : Strong Copyleft (GPL-3.0)

Copy

$ assembly-stats Pf3D7_v3.fasta
stats for Pf3D7_v3.fasta
sum = 23328019, n = 16, ave = 1458001.19, largest = 3291936
N50 = 1687656, n = 5
N60 = 1472805, n = 7
N70 = 1445207, n = 8
N80 = 1343557, n = 10
N90 = 1067971, n = 12
N100 = 5967, n = 16
N_coun

assembly-stats,Installation

C++

Lines of Code : 7

License : Strong Copyleft (GPL-3.0)

Copy

mkdir build
cd build
cmake ..
make
make test
make install

cmake -DINSTALL_DIR:PATH=/foo/bar/ ..

Community Discussions

Trending Discussions on assembly-stats

Command not found error in snakemake pipeline despite the package existing in the conda environment

QUESTION

Command not found error in snakemake pipeline despite the package existing in the conda environment

Asked 2020-Jan-15 at 14:07

I am getting the following error in the snakemake pipeline:

...

ANSWER

Answered 2020-Jan-15 at 14:07

When running a snakemake workflow, if certain rules are to be ran within a rule-specific conda environment, the command line call should be of the form

Source https://stackoverflow.com/questions/59749945

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install assembly-stats

If you encounter an issue when installing assembly-stats please contact your local system administrator. If you encounter a bug please log it here or email us at path-help@sanger.ac.uk. Run the following commands to install the program assembly-stats to /usr/local/bin/.