yaha | accurate DNA alignment tool designed to find optimal split | Genomics library

 by   GregoryFaust C Version: v0.1.83 License: MIT

kandi X-RAY | yaha Summary

kandi X-RAY | yaha Summary

yaha is a C library typically used in Artificial Intelligence, Genomics applications. yaha has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation:. The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              yaha has a low active ecosystem.
              It has 21 star(s) with 3 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 4 open issues and 1 have been closed. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of yaha is v0.1.83

            kandi-Quality Quality

              yaha has no bugs reported.

            kandi-Security Security

              yaha has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              yaha is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              yaha releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of yaha
            Get all kandi verified functions for this library.

            yaha Key Features

            No Key Features are available at this moment for yaha.

            yaha Examples and Code Snippets

            yaha,Usage
            Cdot img1Lines of Code : 49dot img1License : Permissive (MIT)
            copy iconCopy
            yaha -g  -H  -L  -S 
            
            yaha -x  -q  -osh  [Additional Options...]
            
            Input/Output Options:
            -g    FILE input genome file to use during index creation (FASTA or nib2)
            -q    FILE input file of sequence reads to align (FASTA or FASTQ) [STDIN]
            -osh  FILE out  
            yaha,Installation
            Cdot img2Lines of Code : 4dot img2License : Permissive (MIT)
            copy iconCopy
            git clone git://github.com/GregoryFaust/yaha.git
            cd yaha
            make
            cp bin/yaha /usr/local/bin/
              

            Community Discussions

            QUESTION

            How to make toggle button border (as shown) invisible?
            Asked 2021-Feb-05 at 09:13

            As you can see dark red border around toggle button

            I use

            ...

            ANSWER

            Answered 2021-Jan-05 at 19:21

            You should set outline: none for focus state also:

            Source https://stackoverflow.com/questions/65584964

            QUESTION

            How to display uniquely generated slugs in urls
            Asked 2020-Aug-19 at 10:11

            I want my URL's to show slug instead of id. After following a Youtube video I reached to a stage where admin is automatically creating slugs when I save my products. But still I can not figure out how to show slug in url of detailsview.

            I created a utils.py in my project folder which is named as myawesomecart

            ...

            ANSWER

            Answered 2020-Aug-19 at 07:45

            You have to use the slug instead of the id in your url pattern:

            Source https://stackoverflow.com/questions/63481787

            QUESTION

            Unable to detect gibberish names using Python
            Asked 2018-Jun-02 at 21:40

            I am trying to build Python model that could classify account names as either legitimate or gibberish. Capitalization is not important in this particular case as some legitimate account names could be comprised of all upper-case or all lower-case letters.

            Disclaimer: this is just a internal research/experiment and no real action will be taken on the classifier outcome.

            In my particular, there are 2 possible characteristics that can reveal an account name as suspicious, gibberish or both:

            1. Weird/random spelling in name or name consists of purely or mostly numbers. Examples of account names that fit these criteria are: 128, 127, h4rugz4sx383a6n64hpo, tt, t66, t65, asdfds.

            2. The name has 2 components (let's assume that no name will ever have more than 2 components) and the spelling and pronounciation of the 2 components are very similar. Examples of account names that fit these criteria are: Jala Haja, Hata Yaha, Faja Kaja.

            If an account name meets both of the above criteria (i.e. 'asdfs lsdfs', '332 333') it should also be considered suspicious.

            On the other hand, a legitimate account name doesn't need to have both first name and last name. They are usually names from popular languages such as Roman/Latin (i.e. Spanish, German, Portuguese, French, English), Chinese, and Japanese.

            Examples of legitimate account names include (these names are made up but do reflect similar styles of legitimate account names in real world): Michael, sara, jose colmenares, Dimitar, Jose Rafael, Morgan, Eduardo Medina, Luis R. Mendez, Hikaru, SELENIA, Zhang Ming, Xuting Liu, Chen Zheng.

            I've seen some slightly similar questions on Stackoverflow that asks for ways to detect gibberish texts. But those don't fit my situation because legitimate texts and words actually have meanings, whereas human names usually don't. I also want to be able to do it just based on account names and nothing else.

            Right now my script takes care of finding the 2nd characteristic of suspicious account names (similar components in name) using Python's Fuzzy Wuzzy package and using 50% as the similarity threshold. The script is listed below:

            ...

            ANSWER

            Answered 2018-Jun-02 at 21:40

            For the 1st characteristic, you can train a character-based n-gram language model, and treat all names with low average per-character probability as suspicious.

            A quick-and-dirty example of such language model is below. It is a mixture of 1-gram, 2-gram and 3-gram language models, trained on a Brown corpus. I am sure you can find more relevant training data (e.g. list of all names of actors).

            Source https://stackoverflow.com/questions/50659889

            QUESTION

            How to store multiple selected row items in mutable array in tableview
            Asked 2017-May-12 at 09:05

            I had written code for displaying the tableview with 3 sections and now i want to store the selected row item into an array and when ever i tried this below code i am getting array value is nil. suggest me how to solve this problem Below i am adding code and Json sample data

            ...

            ANSWER

            Answered 2017-May-11 at 11:21

            Try this code

            Before you should create new NSMubaleArray *storeArray; NSMutableArray with allocation storeArray = [[NSMutableArray alloc]init]; in viewDidLoad

            Source https://stackoverflow.com/questions/43907986

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install yaha

            yaha can be downloaded from the releases tab or manually downloaded via git clone. For example:.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/GregoryFaust/yaha.git

          • CLI

            gh repo clone GregoryFaust/yaha

          • sshUrl

            git@github.com:GregoryFaust/yaha.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link