SVsim | generates synthetic Structural Variant calls as benchmarks | Genomics library

by GregoryFaust Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | SVsim Summary

SVsim is a Python library typically used in Artificial Intelligence, Genomics applications. SVsim has no bugs, it has no vulnerabilities and it has low support. However SVsim build file is not available. You can download it from GitHub.

SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.

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Quality

Security

License

Reuse

Support

SVsim has a low active ecosystem.

It has 15 star(s) with 2 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 3 open issues and 0 have been closed. On average issues are closed in 977 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of SVsim is current.

Quality

SVsim has no bugs reported.

Security

SVsim has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

SVsim does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

SVsim releases are not available. You will need to build from source code and install.

SVsim has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

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SVsim Key Features

No Key Features are available at this moment for SVsim.

SVsim Examples and Code Snippets

No Code Snippets are available at this moment for SVsim.

Community Discussions

Trending Discussions on SVsim

iverilog recursive function causes segmentation fault

QUESTION

iverilog recursive function causes segmentation fault

Asked 2018-Feb-08 at 00:10

Here's the problematic code:

...

ANSWER

Answered 2018-Feb-04 at 15:55

Change your code to

Source https://stackoverflow.com/questions/48603651

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install SVsim

SVsim is a self contained Python source file and requires no special installation beyond python and pysam. However, we strongy suggest that you have [bedtools](https://github.com/arq5x/bedtools2) and [samtools](http://samtools.sourceforge.net/) installed. In addition, it is common to use [wgsim](https://github.com/lh3/wgsim) to simulate sequencing reads from the fasta file that SVsim produces.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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