Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
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AI Toolkit for Healthcare Imaging
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Official git repository for Biopython (originally converted from CVS)
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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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API for Current cases and more stuff about COVID-19 and Influenza
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OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
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A user-friendly HTML5 form validation jQuery plugin for Bootstrap 3
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Reverse engineering SARS-CoV-2
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Self hosted FLOSS fitness/workout, nutrition and weight tracker written with Django
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The most popular open source electronic health records and medical practice management solution.
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JavaScript library to display interactive medical images including but not limited to DICOM
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🦠 Track the Coronavirus disease (COVID-19) in the command line. Worldwide for all countries, for one country, and the US States. Fast response time (< 100ms). To chat: https://twitter.com/MrAhmadAwais/
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🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!
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🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
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Cloud ML Engine repo. Please visit the new Vertex AI samples repo at https://github.com/GoogleCloudPlatform/vertex-ai-samples
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Models of COVID-19 outbreak trajectories and hospital demand
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Human: AI-powered 3D Face Detection & Rotation Tracking, Face Description & Recognition, Body Pose Tracking, 3D Hand & Finger Tracking, Iris Analysis, Age & Gender & Emotion Prediction, Gaze Tracking, Gesture Recognition
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Nextstrain build for novel coronavirus SARS-CoV-2
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common-workflow-languageby common-workflow-language
Python 
1252 Version:Current License: Permissive (Apache-2.0)
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
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JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily
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Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.
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🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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Folding@home COVID-19 efforts
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Tools for fast and flexible genome assembly scaffolding and improvement
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Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)
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CellRank for directed single-cell fate mapping
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🍸 좋은 술을 고민 없이, 칵테일 추천 서비스 "칵테일픽"
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A simple android project for blood management system.
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SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
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Clustering scRNAseq by genotypes
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Development and validation of an interpretable deep learning framework for Alzheimer's disease classification
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MedType: Improving Medical Entity Linking with Semantic Type Prediction
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Medical insurance claiming DApp which uses a Multi-Sig approach to grant claim (ConsenSys project)
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COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
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Radiology Objects in COntext (ROCO): A Multimodal Image Dataset
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Identification of differential RNA modifications from nanopore direct RNA sequencing
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WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
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SigProfilerMatrixGeneratorby AlexandrovLab
Python 77 Version:Current License: Permissive (BSD-2-Clause)
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
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IterNet: Retinal Image Segmentation Utilizing Structural Redundancy in Vessel Networks. High-accuracy medical retina (eye) image segmentation.
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A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
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Heart-Disease-Predictionby ShubhankarRawat
Python 73 Version:Current
License: No License (No License)
License: No License (No License)Various classification algorithms are implemented to predict whether a person is prone to or is suffering from heart disease
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Medical image viewer using DWV (DICOM Web Viewer) and React.
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Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
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RNA modifications detection from Nanopore dRNA-Seq data
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Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
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A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5
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TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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Comparative Genomics Toolkit 3
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Merging, Annotation, Validation, and Illustration of Structural variants
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Website for NA-MIC Project Weeks
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covid-19-databy owid
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
Python 5597Updated: 10 mo ago License: No License (No License)
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MONAIby Project-MONAI
AI Toolkit for Healthcare Imaging
Python 4116Updated: 10 mo ago License: Permissive (Apache-2.0)
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biopythonby biopython
Official git repository for Biopython (originally converted from CVS)
Python 3633Updated: 10 mo ago License: Proprietary (Proprietary)
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deepvariantby google
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Python 2819Updated: 11 mo ago License: Permissive (BSD-3-Clause)
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APIby disease-sh
API for Current cases and more stuff about COVID-19 and Influenza
JavaScript 2419Updated: 11 mo ago License: Strong Copyleft (GPL-3.0)
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Viewersby OHIF
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
TypeScript 2412Updated: 10 mo ago License: Permissive (MIT)
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bootstrap-validatorby 1000hz
A user-friendly HTML5 form validation jQuery plugin for Bootstrap 3
JavaScript 2407Updated: 3 y ago License: Permissive (MIT)
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coronaby geohot
Reverse engineering SARS-CoV-2
Python 2375Updated: 11 mo ago License: No License (No License)
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wgerby wger-project
Self hosted FLOSS fitness/workout, nutrition and weight tracker written with Django
Python 2319Updated: 10 mo ago License: Strong Copyleft (AGPL-3.0)
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openemrby openemr
The most popular open source electronic health records and medical practice management solution.
PHP 2276Updated: 10 mo ago License: Strong Copyleft (GPL-3.0)
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cornerstoneby cornerstonejs
JavaScript library to display interactive medical images including but not limited to DICOM
JavaScript 1885Updated: 1 y ago License: Permissive (MIT)
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corona-cliby ahmadawais
🦠 Track the Coronavirus disease (COVID-19) in the command line. Worldwide for all countries, for one country, and the US States. Fast response time (< 100ms). To chat: https://twitter.com/MrAhmadAwais/
JavaScript 1858Updated: 1 y ago License: Permissive (MIT)
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coronavirus-tracker-apiby ExpDev07
🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!
Python 1605Updated: 1 y ago License: Strong Copyleft (GPL-3.0)
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awesome-coronavirusby soroushchehresa
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
TypeScript 1542Updated: 10 mo ago License: Permissive (MIT)
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cloudml-samplesby GoogleCloudPlatform
Cloud ML Engine repo. Please visit the new Vertex AI samples repo at https://github.com/GoogleCloudPlatform/vertex-ai-samples
Python 1491Updated: 1 y ago License: Permissive (Apache-2.0)
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covid19_scenariosby neherlab
Models of COVID-19 outbreak trajectories and hospital demand
JavaScript 1376Updated: 1 y ago License: Permissive (MIT)
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humanby vladmandic
Human: AI-powered 3D Face Detection & Rotation Tracking, Face Description & Recognition, Body Pose Tracking, 3D Hand & Finger Tracking, Iris Analysis, Age & Gender & Emotion Prediction, Gaze Tracking, Gesture Recognition
HTML 1367Updated: 11 mo ago License: Permissive (MIT)
1367Updated: 11 mo ago License: Permissive (MIT)Support
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ncovby nextstrain
Nextstrain build for novel coronavirus SARS-CoV-2
Python 1337Updated: 11 mo ago License: Permissive (MIT)
1337Updated: 11 mo ago License: Permissive (MIT)Support
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common-workflow-languageby common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Python 1252Updated: 3 y ago License: Permissive (Apache-2.0)
1252Updated: 3 y ago License: Permissive (Apache-2.0)Support
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covid19by pomber
JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily
JavaScript 1234Updated: 1 y ago License: No License (No License)
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humbugby humbug
Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.
PHP 1142Updated: 1 y ago License: Permissive (BSD-3-Clause)
1142Updated: 1 y ago License: Permissive (BSD-3-Clause)Support
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hapi-fhirby jamesagnew
🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
Java 1113Updated: 3 y ago License: Permissive (Apache-2.0)
1113Updated: 3 y ago License: Permissive (Apache-2.0)Support
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coronavirusby FoldingAtHome
Folding@home COVID-19 efforts
Python 1106Updated: 1 y ago License: No License (No License)
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RagTagby malonge
Tools for fast and flexible genome assembly scaffolding and improvement
Python 336Updated: 11 mo ago License: Permissive (MIT)
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ChineseBLUEby alibaba-research
Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)
Python 249Updated: 3 y ago License: Permissive (Apache-2.0)
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cellrankby theislab
CellRank for directed single-cell fate mapping
Python 239Updated: 10 mo ago License: Permissive (BSD-3-Clause)
239Updated: 10 mo ago License: Permissive (BSD-3-Clause)Support
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2020-6rinkersby woowacourse-teams
🍸 좋은 술을 고민 없이, 칵테일 추천 서비스 "칵테일픽"
Java 228Updated: 1 y ago License: No License (No License)
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BloodBankby imShakil
A simple android project for blood management system.
Java 157Updated: 11 mo ago License: Strong Copyleft (GPL-3.0)
157Updated: 11 mo ago License: Strong Copyleft (GPL-3.0)Support
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SigProfilerExtractorby AlexandrovLab
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Python 126Updated: 11 mo ago License: Permissive (BSD-2-Clause)
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souporcellby wheaton5
Clustering scRNAseq by genotypes
Python 123Updated: 10 mo ago License: Permissive (MIT)
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brain2020by vkola-lab
Development and validation of an interpretable deep learning framework for Alzheimer's disease classification
Python 117Updated: 12 mo ago License: Permissive (MIT)
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medtypeby svjan5
MedType: Improving Medical Entity Linking with Semantic Type Prediction
Python 112Updated: 1 y ago License: Permissive (Apache-2.0)
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HealthCare-Insurance-Ethereumby Rishabh42
Medical insurance claiming DApp which uses a Multi-Sig approach to grant claim (ConsenSys project)
JavaScript 97Updated: 11 mo ago License: Permissive (MIT)
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COVIDNet-CTby haydengunraj
COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
Jupyter Notebook 91Updated: 2 y ago License: Proprietary (Proprietary)
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roco-datasetby razorx89
Radiology Objects in COntext (ROCO): A Multimodal Image Dataset
Python 86Updated: 10 mo ago License: No License (No License)
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xporeby GoekeLab
Identification of differential RNA modifications from nanopore direct RNA sequencing
Python 84Updated: 2 y ago License: Permissive (MIT)
84Updated: 2 y ago License: Permissive (MIT)Support
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wgdiby SunPengChuan
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
Python 78Updated: 11 mo ago License: Permissive (BSD-2-Clause)
78Updated: 11 mo ago License: Permissive (BSD-2-Clause)Support
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SigProfilerMatrixGeneratorby AlexandrovLab
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Python 77Updated: 1 y ago License: Permissive (BSD-2-Clause)
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IterNetby conscienceli
IterNet: Retinal Image Segmentation Utilizing Structural Redundancy in Vessel Networks. High-accuracy medical retina (eye) image segmentation.
Python 75Updated: 1 y ago License: Permissive (MIT)
75Updated: 1 y ago License: Permissive (MIT)Support
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PyFeatby mrzResearchArena
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Python 75Updated: 1 y ago License: Strong Copyleft (GPL-3.0)
75Updated: 1 y ago License: Strong Copyleft (GPL-3.0)Support
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Heart-Disease-Predictionby ShubhankarRawat
Various classification algorithms are implemented to predict whether a person is prone to or is suffering from heart disease
Python 73Updated: 11 mo ago License: No License (No License)
73Updated: 11 mo ago License: No License (No License)Support
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dwv-reactby ivmartel
Medical image viewer using DWV (DICOM Web Viewer) and React.
Java 69Updated: 1 y ago License: Strong Copyleft (GPL-3.0)
69Updated: 1 y ago License: Strong Copyleft (GPL-3.0)Support
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xTeaby parklab
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Python 69Updated: 1 y ago License: Proprietary (Proprietary)
69Updated: 1 y ago License: Proprietary (Proprietary)Support
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nanocomporeby tleonardi
RNA modifications detection from Nanopore dRNA-Seq data
Python 68Updated: 10 mo ago License: Strong Copyleft (GPL-3.0)
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staramrby phac-nml
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Python 68Updated: 10 mo ago License: Permissive (Apache-2.0)
68Updated: 10 mo ago License: Permissive (Apache-2.0)Support
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3d-nii-visualizerby adamkwolf
A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5
Python 68Updated: 3 y ago License: Permissive (MIT)
68Updated: 3 y ago License: Permissive (MIT)Support
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TOGAby hillerlab
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
Python 68Updated: 12 mo ago License: Permissive (MIT)
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cogent3by cogent3
Comparative Genomics Toolkit 3
Python 66Updated: 11 mo ago License: Permissive (BSD-3-Clause)
66Updated: 11 mo ago License: Permissive (BSD-3-Clause)Support
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mavisby bcgsc
Merging, Annotation, Validation, and Illustration of Structural variants
Python 65Updated: 10 mo ago License: Strong Copyleft (GPL-3.0)
65Updated: 10 mo ago License: Strong Copyleft (GPL-3.0)Support
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ProjectWeekby NA-MIC
Website for NA-MIC Project Weeks
Python 63Updated: 10 mo ago License: No License (No License)
63Updated: 10 mo ago License: No License (No License)Support
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