Healthcare Libraries - Page 1

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Python dotstar image 5597 dotVersion:Currentdot
no licences License: No License (No License)

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

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            MONAIby Project-MONAI

            Python dotstar image 4116 dotVersion:Currentdot
            License: Permissive (Apache-2.0)

            AI Toolkit for Healthcare Imaging

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                      biopythonby biopython

                      Python dotstar image 3633 dotVersion:Currentdot
                      License: Proprietary (Proprietary)

                      Official git repository for Biopython (originally converted from CVS)

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                                deepvariantby google

                                Python dotstar image 2819 dotVersion:Currentdot
                                License: Permissive (BSD-3-Clause)

                                DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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                                          APIby disease-sh

                                          JavaScript dotstar image 2419 dotVersion:Currentdot
                                          License: Strong Copyleft (GPL-3.0)

                                          API for Current cases and more stuff about COVID-19 and Influenza

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                                                    Viewersby OHIF

                                                    TypeScript dotstar image 2412 dotVersion:Currentdot
                                                    License: Permissive (MIT)

                                                    OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

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                                                              JavaScript dotstar image 2407 dotVersion:Currentdot
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                                                              A user-friendly HTML5 form validation jQuery plugin for Bootstrap 3

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                                                                        coronaby geohot

                                                                        Python dotstar image 2375 dotVersion:Currentdot
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                                                                        Reverse engineering SARS-CoV-2

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                                                                                  wgerby wger-project

                                                                                  Python dotstar image 2319 dotVersion:Currentdot
                                                                                  License: Strong Copyleft (AGPL-3.0)

                                                                                  Self hosted FLOSS fitness/workout, nutrition and weight tracker written with Django

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                                                                                            openemrby openemr

                                                                                            PHP dotstar image 2276 dotVersion:Currentdot
                                                                                            License: Strong Copyleft (GPL-3.0)

                                                                                            The most popular open source electronic health records and medical practice management solution.

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                                                                                                      cornerstoneby cornerstonejs

                                                                                                      JavaScript dotstar image 1885 dotVersion:Currentdot
                                                                                                      License: Permissive (MIT)

                                                                                                      JavaScript library to display interactive medical images including but not limited to DICOM

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                                                                                                                corona-cliby ahmadawais

                                                                                                                JavaScript dotstar image 1858 dotVersion:Currentdot
                                                                                                                License: Permissive (MIT)

                                                                                                                🦠 Track the Coronavirus disease (COVID-19) in the command line. Worldwide for all countries, for one country, and the US States. Fast response time (< 100ms). To chat: https://twitter.com/MrAhmadAwais/

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                                                                                                                          c

                                                                                                                          Python dotstar image 1605 dotVersion:Currentdot
                                                                                                                          License: Strong Copyleft (GPL-3.0)

                                                                                                                          🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

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                                                                                                                                    awesome-coronavirusby soroushchehresa

                                                                                                                                    TypeScript dotstar image 1542 dotVersion:Currentdot
                                                                                                                                    License: Permissive (MIT)

                                                                                                                                    🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

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                                                                                                                                              cloudml-samplesby GoogleCloudPlatform

                                                                                                                                              Python dotstar image 1491 dotVersion:Currentdot
                                                                                                                                              License: Permissive (Apache-2.0)

                                                                                                                                              Cloud ML Engine repo. Please visit the new Vertex AI samples repo at https://github.com/GoogleCloudPlatform/vertex-ai-samples

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                                                                                                                                                        c

                                                                                                                                                        JavaScript dotstar image 1376 dotVersion:Currentdot
                                                                                                                                                        License: Permissive (MIT)

                                                                                                                                                        Models of COVID-19 outbreak trajectories and hospital demand

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                                                                                                                                                                  humanby vladmandic

                                                                                                                                                                  HTML dotstar image 1367 dotVersion:Currentdot
                                                                                                                                                                  License: Permissive (MIT)

                                                                                                                                                                  Human: AI-powered 3D Face Detection & Rotation Tracking, Face Description & Recognition, Body Pose Tracking, 3D Hand & Finger Tracking, Iris Analysis, Age & Gender & Emotion Prediction, Gaze Tracking, Gesture Recognition

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                                                                                                                                                                            ncovby nextstrain

                                                                                                                                                                            Python dotstar image 1337 dotVersion:Currentdot
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                                                                                                                                                                            Nextstrain build for novel coronavirus SARS-CoV-2

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                                                                                                                                                                                      common-workflow-languageby common-workflow-language

                                                                                                                                                                                      Python dotstar image 1252 dotVersion:Currentdot
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                                                                                                                                                                                      Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

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                                                                                                                                                                                                covid19by pomber

                                                                                                                                                                                                JavaScript dotstar image 1234 dotVersion:Currentdot
                                                                                                                                                                                                no licences License: No License (No License)

                                                                                                                                                                                                JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily

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                                                                                                                                                                                                          humbugby humbug

                                                                                                                                                                                                          PHP dotstar image 1142 dotVersion:Currentdot
                                                                                                                                                                                                          License: Permissive (BSD-3-Clause)

                                                                                                                                                                                                          Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.

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                                                                                                                                                                                                                    hapi-fhirby jamesagnew

                                                                                                                                                                                                                    Java dotstar image 1113 dotVersion:Currentdot
                                                                                                                                                                                                                    License: Permissive (Apache-2.0)

                                                                                                                                                                                                                    🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers

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                                                                                                                                                                                                                              coronavirusby FoldingAtHome

                                                                                                                                                                                                                              Python dotstar image 1106 dotVersion:Currentdot
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                                                                                                                                                                                                                              Folding@home COVID-19 efforts

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                                                                                                                                                                                                                                        RagTagby malonge

                                                                                                                                                                                                                                        Python dotstar image 336 dotVersion:Currentdot
                                                                                                                                                                                                                                        License: Permissive (MIT)

                                                                                                                                                                                                                                        Tools for fast and flexible genome assembly scaffolding and improvement

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                                                                                                                                                                                                                                                  ChineseBLUEby alibaba-research

                                                                                                                                                                                                                                                  Python dotstar image 249 dotVersion:Currentdot
                                                                                                                                                                                                                                                  License: Permissive (Apache-2.0)

                                                                                                                                                                                                                                                  Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)

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                                                                                                                                                                                                                                                            cellrankby theislab

                                                                                                                                                                                                                                                            Python dotstar image 239 dotVersion:Currentdot
                                                                                                                                                                                                                                                            License: Permissive (BSD-3-Clause)

                                                                                                                                                                                                                                                            CellRank for directed single-cell fate mapping

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                                                                                                                                                                                                                                                                      2020-6rinkersby woowacourse-teams

                                                                                                                                                                                                                                                                      Java dotstar image 228 dotVersion:Currentdot
                                                                                                                                                                                                                                                                      no licences License: No License (No License)

                                                                                                                                                                                                                                                                      🍸 좋은 술을 고민 없이, 칵테일 추천 서비스 "칵테일픽"

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                                                                                                                                                                                                                                                                                BloodBankby imShakil

                                                                                                                                                                                                                                                                                Java dotstar image 157 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                A simple android project for blood management system.

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                                                                                                                                                                                                                                                                                          SigProfilerExtractorby AlexandrovLab

                                                                                                                                                                                                                                                                                          Python dotstar image 126 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                          License: Permissive (BSD-2-Clause)

                                                                                                                                                                                                                                                                                          SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

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                                                                                                                                                                                                                                                                                                    souporcellby wheaton5

                                                                                                                                                                                                                                                                                                    Python dotstar image 123 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                    License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                    Clustering scRNAseq by genotypes

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                                                                                                                                                                                                                                                                                                              brain2020by vkola-lab

                                                                                                                                                                                                                                                                                                              Python dotstar image 117 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                              License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                              Development and validation of an interpretable deep learning framework for Alzheimer's disease classification

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                                                                                                                                                                                                                                                                                                                        medtypeby svjan5

                                                                                                                                                                                                                                                                                                                        Python dotstar image 112 dotVersion:Currentdot
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                                                                                                                                                                                                                                                                                                                        MedType: Improving Medical Entity Linking with Semantic Type Prediction

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                                                                                                                                                                                                                                                                                                                                  JavaScript dotstar image 97 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                  License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                  Medical insurance claiming DApp which uses a Multi-Sig approach to grant claim (ConsenSys project)

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                                                                                                                                                                                                                                                                                                                                            COVIDNet-CTby haydengunraj

                                                                                                                                                                                                                                                                                                                                            Jupyter Notebook dotstar image 91 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                            License: Proprietary (Proprietary)

                                                                                                                                                                                                                                                                                                                                            COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT

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                                                                                                                                                                                                                                                                                                                                                      roco-datasetby razorx89

                                                                                                                                                                                                                                                                                                                                                      Python dotstar image 86 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                      no licences License: No License (No License)

                                                                                                                                                                                                                                                                                                                                                      Radiology Objects in COntext (ROCO): A Multimodal Image Dataset

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                                                                                                                                                                                                                                                                                                                                                                xporeby GoekeLab

                                                                                                                                                                                                                                                                                                                                                                Python dotstar image 84 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                                Identification of differential RNA modifications from nanopore direct RNA sequencing

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                                                                                                                                                                                                                                                                                                                                                                          wgdiby SunPengChuan

                                                                                                                                                                                                                                                                                                                                                                          Python dotstar image 78 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                          License: Permissive (BSD-2-Clause)

                                                                                                                                                                                                                                                                                                                                                                          WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

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                                                                                                                                                                                                                                                                                                                                                                                    S

                                                                                                                                                                                                                                                                                                                                                                                    Python dotstar image 77 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                    License: Permissive (BSD-2-Clause)

                                                                                                                                                                                                                                                                                                                                                                                    SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

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                                                                                                                                                                                                                                                                                                                                                                                              IterNetby conscienceli

                                                                                                                                                                                                                                                                                                                                                                                              Python dotstar image 75 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                              License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                                                              IterNet: Retinal Image Segmentation Utilizing Structural Redundancy in Vessel Networks. High-accuracy medical retina (eye) image segmentation.

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                                                                                                                                                                                                                                                                                                                                                                                                        PyFeatby mrzResearchArena

                                                                                                                                                                                                                                                                                                                                                                                                        Python dotstar image 75 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                        License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                                        A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

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                                                                                                                                                                                                                                                                                                                                                                                                                  Heart-Disease-Predictionby ShubhankarRawat

                                                                                                                                                                                                                                                                                                                                                                                                                  Python dotstar image 73 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                  no licences License: No License (No License)

                                                                                                                                                                                                                                                                                                                                                                                                                  Various classification algorithms are implemented to predict whether a person is prone to or is suffering from heart disease

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                                                                                                                                                                                                                                                                                                                                                                                                                            dwv-reactby ivmartel

                                                                                                                                                                                                                                                                                                                                                                                                                            Java dotstar image 69 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                            License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                                                            Medical image viewer using DWV (DICOM Web Viewer) and React.

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                                                                                                                                                                                                                                                                                                                                                                                                                                      xTeaby parklab

                                                                                                                                                                                                                                                                                                                                                                                                                                      Python dotstar image 69 dotVersion:Currentdot
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                                                                                                                                                                                                                                                                                                                                                                                                                                      Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

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                                                                                                                                                                                                                                                                                                                                                                                                                                                nanocomporeby tleonardi

                                                                                                                                                                                                                                                                                                                                                                                                                                                Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                                                                                RNA modifications detection from Nanopore dRNA-Seq data

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                                                                                                                                                                                                                                                                                                                                                                                                                                                          staramrby phac-nml

                                                                                                                                                                                                                                                                                                                                                                                                                                                          Python dotstar image 68 dotVersion:Currentdot
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                                                                                                                                                                                                                                                                                                                                                                                                                                                          Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                    3d-nii-visualizerby adamkwolf

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TOGAby hillerlab

                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cogent3by cogent3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Python dotstar image 66 dotVersion:Currentdot
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Comparative Genomics Toolkit 3

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  mavisby bcgsc

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Python dotstar image 65 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Merging, Annotation, Validation, and Illustration of Structural variants

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ProjectWeekby NA-MIC

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Python dotstar image 63 dotVersion:Currentdot
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Website for NA-MIC Project Weeks

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      covid-19-databy owid
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                MONAIby Project-MONAI
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AI Toolkit for Healthcare Imaging
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          biopythonby biopython
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Official git repository for Biopython (originally converted from CVS)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    deepvariantby google
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              APIby disease-sh
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              API for Current cases and more stuff about COVID-19 and Influenza
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Viewersby OHIF
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TypeScriptdotstar image 2412dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  bootstrap-validatorby 1000hz
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  A user-friendly HTML5 form validation jQuery plugin for Bootstrap 3
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            coronaby geohot
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Reverse engineering SARS-CoV-2
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      wgerby wger-project
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Self hosted FLOSS fitness/workout, nutrition and weight tracker written with Django
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                openemrby openemr
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                The most popular open source electronic health records and medical practice management solution.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cornerstoneby cornerstonejs
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          JavaScript library to display interactive medical images including but not limited to DICOM
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          JavaScriptdotstar image 1885dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    corona-cliby ahmadawais
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    🦠 Track the Coronavirus disease (COVID-19) in the command line. Worldwide for all countries, for one country, and the US States. Fast response time (< 100ms). To chat: https://twitter.com/MrAhmadAwais/
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              coronavirus-tracker-apiby ExpDev07
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pythondotstar image 1605dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        awesome-coronavirusby soroushchehresa
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cloudml-samplesby GoogleCloudPlatform
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Cloud ML Engine repo. Please visit the new Vertex AI samples repo at https://github.com/GoogleCloudPlatform/vertex-ai-samples
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Pythondotstar image 1491dotUpdated: 1 y agodot License: Permissive (Apache-2.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            covid19_scenariosby neherlab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Models of COVID-19 outbreak trajectories and hospital demand
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      humanby vladmandic
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human: AI-powered 3D Face Detection & Rotation Tracking, Face Description & Recognition, Body Pose Tracking, 3D Hand & Finger Tracking, Iris Analysis, Age & Gender & Emotion Prediction, Gaze Tracking, Gesture Recognition
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      HTMLdotstar image 1367dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ncovby nextstrain
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Nextstrain build for novel coronavirus SARS-CoV-2
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          common-workflow-languageby common-workflow-language
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    covid19by pomber
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              humbugby humbug
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        hapi-fhirby jamesagnew
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  coronavirusby FoldingAtHome
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Folding@home COVID-19 efforts
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Pythondotstar image 1106dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            RagTagby malonge
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Tools for fast and flexible genome assembly scaffolding and improvement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pythondotstar image 336dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ChineseBLUEby alibaba-research
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Pythondotstar image 249dotUpdated: 3 y agodot License: Permissive (Apache-2.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cellrankby theislab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CellRank for directed single-cell fate mapping
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Pythondotstar image 239dotUpdated: 1 y agodot License: Permissive (BSD-3-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          2020-6rinkersby woowacourse-teams
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          🍸 좋은 술을 고민 없이, 칵테일 추천 서비스 "칵테일픽"
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Javadotstar image 228dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    BloodBankby imShakil
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    A simple android project for blood management system.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Javadotstar image 157dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SigProfilerExtractorby AlexandrovLab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pythondotstar image 126dotUpdated: 1 y agodot License: Permissive (BSD-2-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        souporcellby wheaton5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Clustering scRNAseq by genotypes
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pythondotstar image 123dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  brain2020by vkola-lab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Development and validation of an interpretable deep learning framework for Alzheimer's disease classification
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Pythondotstar image 117dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            medtypeby svjan5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            MedType: Improving Medical Entity Linking with Semantic Type Prediction
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pythondotstar image 112dotUpdated: 1 y agodot License: Permissive (Apache-2.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      HealthCare-Insurance-Ethereumby Rishabh42
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Medical insurance claiming DApp which uses a Multi-Sig approach to grant claim (ConsenSys project)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      JavaScriptdotstar image 97dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                COVIDNet-CTby haydengunraj
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Jupyter Notebookdotstar image 91dotUpdated: 2 y agodot License: Proprietary (Proprietary)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          roco-datasetby razorx89
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Radiology Objects in COntext (ROCO): A Multimodal Image Dataset
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pythondotstar image 86dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    xporeby GoekeLab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Identification of differential RNA modifications from nanopore direct RNA sequencing
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Pythondotstar image 84dotUpdated: 2 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              wgdiby SunPengChuan
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pythondotstar image 78dotUpdated: 1 y agodot License: Permissive (BSD-2-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SigProfilerMatrixGeneratorby AlexandrovLab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pythondotstar image 77dotUpdated: 1 y agodot License: Permissive (BSD-2-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  IterNetby conscienceli
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  IterNet: Retinal Image Segmentation Utilizing Structural Redundancy in Vessel Networks. High-accuracy medical retina (eye) image segmentation.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Pythondotstar image 75dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            PyFeatby mrzResearchArena
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pythondotstar image 75dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Heart-Disease-Predictionby ShubhankarRawat
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Various classification algorithms are implemented to predict whether a person is prone to or is suffering from heart disease
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Pythondotstar image 73dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                dwv-reactby ivmartel
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Medical image viewer using DWV (DICOM Web Viewer) and React.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Javadotstar image 69dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          xTeaby parklab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pythondotstar image 69dotUpdated: 1 y agodot License: Proprietary (Proprietary)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    RNA modifications detection from Nanopore dRNA-Seq data
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Comparative Genomics Toolkit 3
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Merging, Annotation, Validation, and Illustration of Structural variants
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Website for NA-MIC Project Weeks
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Pythondotstar image 63dotUpdated: 1 y agodotno licences License: No License (No License)
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