Pharma and Life Sciences Libraries - Page 1

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Python dotstar image 5597 dotVersion:Currentdot
no licences License: No License (No License)

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

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            MONAIby Project-MONAI

            Python dotstar image 4116 dotVersion:Currentdot
            License: Permissive (Apache-2.0)

            AI Toolkit for Healthcare Imaging

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                      biopythonby biopython

                      Python dotstar image 3633 dotVersion:Currentdot
                      License: Proprietary (Proprietary)

                      Official git repository for Biopython (originally converted from CVS)

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                                deepvariantby google

                                Python dotstar image 2819 dotVersion:Currentdot
                                License: Permissive (BSD-3-Clause)

                                DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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                                          APIby disease-sh

                                          JavaScript dotstar image 2419 dotVersion:Currentdot
                                          License: Strong Copyleft (GPL-3.0)

                                          API for Current cases and more stuff about COVID-19 and Influenza

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                                                    Viewersby OHIF

                                                    TypeScript dotstar image 2412 dotVersion:Currentdot
                                                    License: Permissive (MIT)

                                                    OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

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                                                              JavaScript dotstar image 2407 dotVersion:Currentdot
                                                              License: Permissive (MIT)

                                                              A user-friendly HTML5 form validation jQuery plugin for Bootstrap 3

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                                                                        coronaby geohot

                                                                        Python dotstar image 2375 dotVersion:Currentdot
                                                                        no licences License: No License (No License)

                                                                        Reverse engineering SARS-CoV-2

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                                                                                  openemrby openemr

                                                                                  PHP dotstar image 2276 dotVersion:Currentdot
                                                                                  License: Strong Copyleft (GPL-3.0)

                                                                                  The most popular open source electronic health records and medical practice management solution.

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                                                                                            cornerstoneby cornerstonejs

                                                                                            JavaScript dotstar image 1885 dotVersion:Currentdot
                                                                                            License: Permissive (MIT)

                                                                                            JavaScript library to display interactive medical images including but not limited to DICOM

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                                                                                                      corona-cliby ahmadawais

                                                                                                      JavaScript dotstar image 1858 dotVersion:Currentdot
                                                                                                      License: Permissive (MIT)

                                                                                                      🦠 Track the Coronavirus disease (COVID-19) in the command line. Worldwide for all countries, for one country, and the US States. Fast response time (< 100ms). To chat: https://twitter.com/MrAhmadAwais/

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                                                                                                                c

                                                                                                                Python dotstar image 1605 dotVersion:Currentdot
                                                                                                                License: Strong Copyleft (GPL-3.0)

                                                                                                                🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

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                                                                                                                          awesome-coronavirusby soroushchehresa

                                                                                                                          TypeScript dotstar image 1542 dotVersion:Currentdot
                                                                                                                          License: Permissive (MIT)

                                                                                                                          🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

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                                                                                                                                    cloudml-samplesby GoogleCloudPlatform

                                                                                                                                    Python dotstar image 1491 dotVersion:Currentdot
                                                                                                                                    License: Permissive (Apache-2.0)

                                                                                                                                    Cloud ML Engine repo. Please visit the new Vertex AI samples repo at https://github.com/GoogleCloudPlatform/vertex-ai-samples

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                                                                                                                                              JavaScript dotstar image 1376 dotVersion:Currentdot
                                                                                                                                              License: Permissive (MIT)

                                                                                                                                              Models of COVID-19 outbreak trajectories and hospital demand

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                                                                                                                                                        humanby vladmandic

                                                                                                                                                        HTML dotstar image 1367 dotVersion:Currentdot
                                                                                                                                                        License: Permissive (MIT)

                                                                                                                                                        Human: AI-powered 3D Face Detection & Rotation Tracking, Face Description & Recognition, Body Pose Tracking, 3D Hand & Finger Tracking, Iris Analysis, Age & Gender & Emotion Prediction, Gaze Tracking, Gesture Recognition

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                                                                                                                                                                  ncovby nextstrain

                                                                                                                                                                  Python dotstar image 1337 dotVersion:Currentdot
                                                                                                                                                                  License: Permissive (MIT)

                                                                                                                                                                  Nextstrain build for novel coronavirus SARS-CoV-2

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                                                                                                                                                                            common-workflow-languageby common-workflow-language

                                                                                                                                                                            Python dotstar image 1252 dotVersion:Currentdot
                                                                                                                                                                            License: Permissive (Apache-2.0)

                                                                                                                                                                            Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

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                                                                                                                                                                                      covid19by pomber

                                                                                                                                                                                      JavaScript dotstar image 1234 dotVersion:Currentdot
                                                                                                                                                                                      no licences License: No License (No License)

                                                                                                                                                                                      JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily

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                                                                                                                                                                                                humbugby humbug

                                                                                                                                                                                                PHP dotstar image 1142 dotVersion:Currentdot
                                                                                                                                                                                                License: Permissive (BSD-3-Clause)

                                                                                                                                                                                                Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.

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                                                                                                                                                                                                          hapi-fhirby jamesagnew

                                                                                                                                                                                                          Java dotstar image 1113 dotVersion:Currentdot
                                                                                                                                                                                                          License: Permissive (Apache-2.0)

                                                                                                                                                                                                          🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers

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                                                                                                                                                                                                                    coronavirusby FoldingAtHome

                                                                                                                                                                                                                    Python dotstar image 1106 dotVersion:Currentdot
                                                                                                                                                                                                                    no licences License: No License (No License)

                                                                                                                                                                                                                    Folding@home COVID-19 efforts

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                                                                                                                                                                                                                              RagTagby malonge

                                                                                                                                                                                                                              Python dotstar image 336 dotVersion:Currentdot
                                                                                                                                                                                                                              License: Permissive (MIT)

                                                                                                                                                                                                                              Tools for fast and flexible genome assembly scaffolding and improvement

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                                                                                                                                                                                                                                        ChineseBLUEby alibaba-research

                                                                                                                                                                                                                                        Python dotstar image 249 dotVersion:Currentdot
                                                                                                                                                                                                                                        License: Permissive (Apache-2.0)

                                                                                                                                                                                                                                        Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)

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                                                                                                                                                                                                                                                  cellrankby theislab

                                                                                                                                                                                                                                                  Python dotstar image 239 dotVersion:Currentdot
                                                                                                                                                                                                                                                  License: Permissive (BSD-3-Clause)

                                                                                                                                                                                                                                                  CellRank for directed single-cell fate mapping

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                                                                                                                                                                                                                                                            2020-6rinkersby woowacourse-teams

                                                                                                                                                                                                                                                            Java dotstar image 228 dotVersion:Currentdot
                                                                                                                                                                                                                                                            no licences License: No License (No License)

                                                                                                                                                                                                                                                            🍸 좋은 술을 고민 없이, 칵테일 추천 서비스 "칵테일픽"

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                                                                                                                                                                                                                                                                      BloodBankby imShakil

                                                                                                                                                                                                                                                                      Java dotstar image 157 dotVersion:Currentdot
                                                                                                                                                                                                                                                                      License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                      A simple android project for blood management system.

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                                                                                                                                                                                                                                                                                SigProfilerExtractorby AlexandrovLab

                                                                                                                                                                                                                                                                                Python dotstar image 126 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                License: Permissive (BSD-2-Clause)

                                                                                                                                                                                                                                                                                SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

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                                                                                                                                                                                                                                                                                          souporcellby wheaton5

                                                                                                                                                                                                                                                                                          Python dotstar image 123 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                          License: Permissive (MIT)

                                                                                                                                                                                                                                                                                          Clustering scRNAseq by genotypes

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                                                                                                                                                                                                                                                                                                    brain2020by vkola-lab

                                                                                                                                                                                                                                                                                                    Python dotstar image 117 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                    License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                    Development and validation of an interpretable deep learning framework for Alzheimer's disease classification

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                                                                                                                                                                                                                                                                                                              medtypeby svjan5

                                                                                                                                                                                                                                                                                                              Python dotstar image 112 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                              License: Permissive (Apache-2.0)

                                                                                                                                                                                                                                                                                                              MedType: Improving Medical Entity Linking with Semantic Type Prediction

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                                                                                                                                                                                                                                                                                                                        JavaScript dotstar image 97 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                        License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                        Medical insurance claiming DApp which uses a Multi-Sig approach to grant claim (ConsenSys project)

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                                                                                                                                                                                                                                                                                                                                  COVIDNet-CTby haydengunraj

                                                                                                                                                                                                                                                                                                                                  Jupyter Notebook dotstar image 91 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                  License: Proprietary (Proprietary)

                                                                                                                                                                                                                                                                                                                                  COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT

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                                                                                                                                                                                                                                                                                                                                            roco-datasetby razorx89

                                                                                                                                                                                                                                                                                                                                            Python dotstar image 86 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                            no licences License: No License (No License)

                                                                                                                                                                                                                                                                                                                                            Radiology Objects in COntext (ROCO): A Multimodal Image Dataset

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                                                                                                                                                                                                                                                                                                                                                      xporeby GoekeLab

                                                                                                                                                                                                                                                                                                                                                      Python dotstar image 84 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                      License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                      Identification of differential RNA modifications from nanopore direct RNA sequencing

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                                                                                                                                                                                                                                                                                                                                                                wgdiby SunPengChuan

                                                                                                                                                                                                                                                                                                                                                                Python dotstar image 78 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                License: Permissive (BSD-2-Clause)

                                                                                                                                                                                                                                                                                                                                                                WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

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                                                                                                                                                                                                                                                                                                                                                                          Python dotstar image 77 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                          License: Permissive (BSD-2-Clause)

                                                                                                                                                                                                                                                                                                                                                                          SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

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                                                                                                                                                                                                                                                                                                                                                                                    PyFeatby mrzResearchArena

                                                                                                                                                                                                                                                                                                                                                                                    Python dotstar image 75 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                    License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                    A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

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                                                                                                                                                                                                                                                                                                                                                                                              Heart-Disease-Predictionby ShubhankarRawat

                                                                                                                                                                                                                                                                                                                                                                                              Python dotstar image 73 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                              no licences License: No License (No License)

                                                                                                                                                                                                                                                                                                                                                                                              Various classification algorithms are implemented to predict whether a person is prone to or is suffering from heart disease

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                                                                                                                                                                                                                                                                                                                                                                                                        dwv-reactby ivmartel

                                                                                                                                                                                                                                                                                                                                                                                                        Java dotstar image 69 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                        License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                                        Medical image viewer using DWV (DICOM Web Viewer) and React.

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                                                                                                                                                                                                                                                                                                                                                                                                                  xTeaby parklab

                                                                                                                                                                                                                                                                                                                                                                                                                  Python dotstar image 69 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                  License: Proprietary (Proprietary)

                                                                                                                                                                                                                                                                                                                                                                                                                  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

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                                                                                                                                                                                                                                                                                                                                                                                                                            nanocomporeby tleonardi

                                                                                                                                                                                                                                                                                                                                                                                                                            Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                            License: Strong Copyleft (GPL-3.0)

                                                                                                                                                                                                                                                                                                                                                                                                                            RNA modifications detection from Nanopore dRNA-Seq data

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                                                                                                                                                                                                                                                                                                                                                                                                                                      staramrby phac-nml

                                                                                                                                                                                                                                                                                                                                                                                                                                      Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                      License: Permissive (Apache-2.0)

                                                                                                                                                                                                                                                                                                                                                                                                                                      Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

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                                                                                                                                                                                                                                                                                                                                                                                                                                                3d-nii-visualizerby adamkwolf

                                                                                                                                                                                                                                                                                                                                                                                                                                                Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                                                                                                                A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5

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                                                                                                                                                                                                                                                                                                                                                                                                                                                          TOGAby hillerlab

                                                                                                                                                                                                                                                                                                                                                                                                                                                          Python dotstar image 68 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                          License: Permissive (MIT)

                                                                                                                                                                                                                                                                                                                                                                                                                                                          TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cogent3by cogent3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Python dotstar image 66 dotVersion:Currentdot
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    License: Permissive (BSD-3-Clause)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Comparative Genomics Toolkit 3

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                              mavisby bcgsc

                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Python dotstar image 65 dotVersion:Currentdot
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Merging, Annotation, Validation, and Illustration of Structural variants

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ProjectWeekby NA-MIC

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Website for NA-MIC Project Weeks

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Convolutional AutoEncoder application on MRI images

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gentunby gmontamat

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Hyperparameter tuning for machine learning models using a distributed genetic algorithm

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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      covid-19-databy owid
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                MONAIby Project-MONAI
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AI Toolkit for Healthcare Imaging
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          biopythonby biopython
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Official git repository for Biopython (originally converted from CVS)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    deepvariantby google
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              APIby disease-sh
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              API for Current cases and more stuff about COVID-19 and Influenza
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Viewersby OHIF
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  bootstrap-validatorby 1000hz
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  A user-friendly HTML5 form validation jQuery plugin for Bootstrap 3
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            coronaby geohot
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Reverse engineering SARS-CoV-2
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      openemrby openemr
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      The most popular open source electronic health records and medical practice management solution.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cornerstoneby cornerstonejs
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                JavaScript library to display interactive medical images including but not limited to DICOM
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          corona-cliby ahmadawais
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          🦠 Track the Coronavirus disease (COVID-19) in the command line. Worldwide for all countries, for one country, and the US States. Fast response time (< 100ms). To chat: https://twitter.com/MrAhmadAwais/
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    coronavirus-tracker-apiby ExpDev07
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Pythondotstar image 1605dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              awesome-coronavirusby soroushchehresa
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cloudml-samplesby GoogleCloudPlatform
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Cloud ML Engine repo. Please visit the new Vertex AI samples repo at https://github.com/GoogleCloudPlatform/vertex-ai-samples
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  covid19_scenariosby neherlab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Models of COVID-19 outbreak trajectories and hospital demand
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            humanby vladmandic
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human: AI-powered 3D Face Detection & Rotation Tracking, Face Description & Recognition, Body Pose Tracking, 3D Hand & Finger Tracking, Iris Analysis, Age & Gender & Emotion Prediction, Gaze Tracking, Gesture Recognition
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ncovby nextstrain
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Nextstrain build for novel coronavirus SARS-CoV-2
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                common-workflow-languageby common-workflow-language
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          covid19by pomber
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    humbugby humbug
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              hapi-fhirby jamesagnew
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        coronavirusby FoldingAtHome
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Folding@home COVID-19 efforts
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  RagTagby malonge
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Tools for fast and flexible genome assembly scaffolding and improvement
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ChineseBLUEby alibaba-research
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Pythondotstar image 249dotUpdated: 3 y agodot License: Permissive (Apache-2.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cellrankby theislab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CellRank for directed single-cell fate mapping
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Pythondotstar image 239dotUpdated: 1 y agodot License: Permissive (BSD-3-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                2020-6rinkersby woowacourse-teams
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                🍸 좋은 술을 고민 없이, 칵테일 추천 서비스 "칵테일픽"
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Javadotstar image 228dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          BloodBankby imShakil
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          A simple android project for blood management system.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Javadotstar image 157dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SigProfilerExtractorby AlexandrovLab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Pythondotstar image 126dotUpdated: 1 y agodot License: Permissive (BSD-2-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              souporcellby wheaton5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Clustering scRNAseq by genotypes
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pythondotstar image 123dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        brain2020by vkola-lab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Development and validation of an interpretable deep learning framework for Alzheimer's disease classification
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pythondotstar image 117dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  medtypeby svjan5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  MedType: Improving Medical Entity Linking with Semantic Type Prediction
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Pythondotstar image 112dotUpdated: 1 y agodot License: Permissive (Apache-2.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            HealthCare-Insurance-Ethereumby Rishabh42
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Medical insurance claiming DApp which uses a Multi-Sig approach to grant claim (ConsenSys project)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            JavaScriptdotstar image 97dotUpdated: 1 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      COVIDNet-CTby haydengunraj
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Jupyter Notebookdotstar image 91dotUpdated: 2 y agodot License: Proprietary (Proprietary)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                roco-datasetby razorx89
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Radiology Objects in COntext (ROCO): A Multimodal Image Dataset
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Pythondotstar image 86dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          xporeby GoekeLab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Identification of differential RNA modifications from nanopore direct RNA sequencing
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pythondotstar image 84dotUpdated: 2 y agodot License: Permissive (MIT)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    wgdiby SunPengChuan
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Pythondotstar image 78dotUpdated: 1 y agodot License: Permissive (BSD-2-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SigProfilerMatrixGeneratorby AlexandrovLab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pythondotstar image 77dotUpdated: 1 y agodot License: Permissive (BSD-2-Clause)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        PyFeatby mrzResearchArena
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pythondotstar image 75dotUpdated: 2 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Heart-Disease-Predictionby ShubhankarRawat
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Various classification algorithms are implemented to predict whether a person is prone to or is suffering from heart disease
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Pythondotstar image 73dotUpdated: 1 y agodotno licences License: No License (No License)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            dwv-reactby ivmartel
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Medical image viewer using DWV (DICOM Web Viewer) and React.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Javadotstar image 69dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      xTeaby parklab
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Pythondotstar image 69dotUpdated: 1 y agodot License: Proprietary (Proprietary)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                nanocomporeby tleonardi
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                RNA modifications detection from Nanopore dRNA-Seq data
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Pythondotstar image 68dotUpdated: 1 y agodot License: Strong Copyleft (GPL-3.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          staramrby phac-nml
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pythondotstar image 68dotUpdated: 1 y agodot License: Permissive (Apache-2.0)
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    3d-nii-visualizerby adamkwolf
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Comparative Genomics Toolkit 3
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Merging, Annotation, Validation, and Illustration of Structural variants
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Website for NA-MIC Project Weeks
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Convolutional AutoEncoder application on MRI images
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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Hyperparameter tuning for machine learning models using a distributed genetic algorithm
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