gedi | Genomic data integration platform | Genomics library

by erhard-lab Java Version: Gedi_1.0.5 License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | gedi Summary

gedi is a Java library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. gedi has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However gedi build file is not available. You can download it from GitHub.

Gedi is a software platform for handling genomic data such as sequencing reads, sequences, per-base numeric values or annotations written in Java. Gedi is developed in the group of Florian Erhard at the Institute for Virology and Immunobiology at the University of Würzburg.

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gedi has a low active ecosystem.

It has 23 star(s) with 8 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 11 open issues and 70 have been closed. On average issues are closed in 477 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of gedi is Gedi_1.0.5

Quality

gedi has 0 bugs and 0 code smells.

Security

gedi has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

gedi code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

gedi is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

gedi releases are available to install and integrate.

gedi has no build file. You will be need to create the build yourself to build the component from source.

gedi saves you 171607 person hours of effort in developing the same functionality from scratch.

It has 174892 lines of code, 17478 functions and 1586 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed gedi and discovered the below as its top functions. This is intended to give you an instant insight into gedi implemented functionality, and help decide if they suit your requirements.

Main method for testing
Determines cell barcodes
Set the barcode attributes
Gets reference sequences
Test the histogram in clusters
Calculate DDirichlet 1
Serializes the binary structure
Write a short
Creates a binary data structure
Writes characters to the buffer
The map function
Transforms an Alignment region into a barcode region
Determine a paired alignment
Estimate the binary model
Normalizes the visualization factors
Only for testing
Converts a subread interval into a set of matched regions
Applies sampler to the given iterator
Generate estimate data
Creates a PDF file
Writes an array of integers
Creates a pixel block map
Creates the suffix array
Demonstrates how to read some data
Returns a string representation of the alignment
Main entry point for parsing

Get all kandi verified functions for this library.

gedi Key Features

No Key Features are available at this moment for gedi.

gedi Examples and Code Snippets

No Code Snippets are available at this moment for gedi.

Community Discussions

Trending Discussions on gedi

Generate all consonances of a string

Android custom spinner SelectedItem

QUESTION

Generate all consonances of a string

Asked 2018-Sep-26 at 10:46

I'd like to generate all consonances of a given string.

Consonance is a stylistic literary device identified by the repetition of identical or similar consonants in neighboring words whose vowel sounds are different. (Wikipedia)

A consonant is a letter of an alphabet that denotes a consonant sound. The following table assimilates groups of English consonants, taking the following conveniences to keep things simple(istic):

It ignores diagraphs ("sh", "ch", "th", etc.).
It ignores vowels.
It ignores "h", "y", "w", "x".
It assumes that a given letter can only be a member of one consonants group. Thus, "c" is (randomly) put together with "s" and "z", and "g" with "j".

Let's also assume that an input that conforms to cases 2 & 3 is allowed and should simply be ignored. However, an input is invalid if it either conforms to case 1, or it breaks case 4 (see examples below).

So:

...

ANSWER

Answered 2018-Sep-25 at 21:16

I'd recommend to organize the relevant consonants in a map:

Source https://stackoverflow.com/questions/52505840

QUESTION

Android custom spinner SelectedItem

Asked 2017-Nov-07 at 09:12

I made a spinner in which im using a arrayadapter to populate it with images and text. on OnItemSelected i want to select only and only the text not the image.

Here is my code for the MainActivity.java

...

ANSWER

Answered 2017-Nov-07 at 07:55

Try implementing using Interface.

Set text data inside SpinnerAdapter and extend Interface in Activity class to get the selected text

Source https://stackoverflow.com/questions/47152558

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install gedi

You can download it from GitHub.
You can use gedi like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the gedi component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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