obo-tutorial | #Genomics | using Open Biological and Biomedical Ontologies

 by   jamesaoverton Java Updated: 8 months ago - v0.1 License: No License

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kandi X-RAY | obo-tutorial REVIEW AND RATINGS

The Open Biological and Biomedical Ontologies (OBO) provide a suite of high-quality, interoperable, free and open source tools for sharing scientific knowledge and making new discoveries. This tutorial reflects the lessons that I've learned using OBO ontologies to work with scientific data. You'll learn how to use OBO ontologies to communicate more clearly, to integrate data, and to improve search and analysis. We use a single running example to keep things concrete: a spreadsheet of data about histology observations. Starting with this data, we build an application ontology, transform the data into linked data, and then apply an automated reasoner and query over it. All using open source code and tools. NOTE: This is still a work in progress. Not all of the sections are complete.

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Support

  • obo-tutorial has a low active ecosystem.
  • It has 26 star(s) with 27 fork(s).
  • It had no major release in the last 12 months.
  • On average issues are closed in 14 days.
  • It has a neutral sentiment in the developer community.

quality kandi
Quality

  • obo-tutorial has no issues reported.

security
Security

  • obo-tutorial has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

license
License

  • obo-tutorial does not have a standard license declared.
  • Check the repository for any license declaration and review the terms closely.
  • Without a license, all rights are reserved, and you cannot use the library in your applications.

build
Reuse

  • obo-tutorial releases are available to install and integrate.
  • obo-tutorial has no build file. You will be need to create the build yourself to build the component from source.
Top functions reviewed by kandi - BETA

kandi has reviewed obo-tutorial and discovered the below as its top functions. This is intended to give you an instant insight into obo-tutorial implemented functionality, and help decide if they suit your requirements.

  • Maps the term mapping file to a list of term mapping file .
  • Extracts ontology from sourcePath to target URI .
  • Converts a CSV file into a Model .
  • Merge the given ontology .
  • Prints the usage command .
  • Removes all axioms from the given ontology
  • Main entry point .

obo-tutorial Key Features

Introduction

Names and Naming

Open Biological and Biomedical Ontologies (OBO)

Using and Reusing Ontologies

Processing Data with Ontologies

Updating, Testing, and Releasing Ontologies

obo-tutorial examples and code snippets

No Code Snippets are available at this moment for obo-tutorial.Refer to component home page for details.

No Code Snippets are available at this moment for obo-tutorial.Refer to component home page for details.

COMMUNITY DISCUSSIONS

No Community Discussions are available at this moment for obo-tutorial.Refer to stack overflow page for discussions.

No Community Discussions are available at this moment for obo-tutorial.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

VULNERABILITIES

No vulnerabilities reported

INSTALL obo-tutorial

You can use obo-tutorial like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the obo-tutorial component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

SUPPORT

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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