myseq | protecting interactive analysis of personal genomes | Genomics library

by mlinderm JavaScript Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | myseq Summary

myseq is a JavaScript library typically used in Artificial Intelligence, Genomics applications. myseq has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

MySeq is a web-application for privacy-protecting interactive analysis of personal genomes (distributed as compressed-and-indexed VCF files) inspired by GENOtation (previously the Interpretome) and DNA.LAND Compass. MySeq is intended for use as a genomics educational platform. MySeq can load and analyze Tabix-indexed VCF files stored locally on the user's computer or available remotely. Queries and other analyses will only load the necessary blocks of the compressed VCF file, enabling efficient analysis of whole-genome-scale VCF files.

Support

Quality

Security

License

Reuse

Support

myseq has a low active ecosystem.

It has 5 star(s) with 1 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

myseq has no issues reported. There are 13 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of myseq is current.

Quality

myseq has no bugs reported.

Security

myseq has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

myseq does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

myseq releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of myseq

Get all kandi verified functions for this library.

myseq Key Features

No Key Features are available at this moment for myseq.

myseq Examples and Code Snippets

No Code Snippets are available at this moment for myseq.

Community Discussions

Trending Discussions on myseq

Process sequence of elements in scala

Difference between type constructors and parametrized type bounds in Scala

How to insert database mysql. Solve?

Oracle: Trigger to insert values into another Table with one additional auto increment primary key column

python sys.argv in classes name.py [list of integers 2, 4,..], integer

Need to resequence a column in SQL Server

Python for-loop stopping prematurely

ggplot for objects stored in an 3D array

Rendering a matplotlib image into flask

How to check if a numpy array is inside a Python sequence?

QUESTION

Process sequence of elements in scala

Asked 2021-May-25 at 08:35

Given a sorted sequence of pair, I combine the elements if they are continuous or smaller and skip if they are not. For example: if A = Seq((1,2),(3,4),(5,6),(8,10)(11,15))

output should be Seq((1,6),(8,15))

since last element of current entry is continuous with first element of next entry

if B = Seq((1,4),(3,5),(6,7),(9,10)(11,15))

output should be Seq((1,7),(9,15))

since last element of current entry is smaller with first element of next entry

I tried something like:

...

ANSWER

Answered 2021-May-25 at 08:35

You can do this with foldRight and accumulate into a new Seq.

This works

Source https://stackoverflow.com/questions/67681637

QUESTION

Difference between type constructors and parametrized type bounds in Scala

Asked 2021-Mar-27 at 19:50

Take a look at the following code:

...

ANSWER

Answered 2021-Mar-27 at 18:06

T[_]: Seq

Source https://stackoverflow.com/questions/66834495

QUESTION

How to insert database mysql. Solve?

Asked 2021-Mar-20 at 08:57

How can I insert the file data into the table mysql?

code:

...

ANSWER

Answered 2021-Jan-28 at 20:26

You must carefully match the columns, the placeholders, and the values so that there is an identical number of each:

Source https://stackoverflow.com/questions/65944655

QUESTION

Oracle: Trigger to insert values into another Table with one additional auto increment primary key column

Asked 2021-Mar-12 at 06:16

I have one Oracle table say

...

ANSWER

Answered 2021-Mar-12 at 06:13

Please try this:

create or replace trigger MyTrigger after insert on Table1 for each row

DECLARE v_recordid int;

BEGIN select MySeq.nextval into v_recordid from dual;

insert into Table2 (roll_number,myTimestamp,recordid) values ( :new.roll_number,:new.myTimestamp,v_recordid ); end;

Source https://stackoverflow.com/questions/66594724

QUESTION

python sys.argv in classes name.py [list of integers 2, 4,..], integer

Asked 2020-Dec-04 at 05:55

I wanna pass 2 arguments, one as list [8, 10], and one as integer in terminal. file MySeq.py

like: MySeq.py [8, 10], 32 How would i do this?

...

ANSWER

Answered 2020-Dec-04 at 05:52

A very crude way will be to pass arguments like this:

Source https://stackoverflow.com/questions/65138371

QUESTION

Need to resequence a column in SQL Server

Asked 2020-Nov-22 at 07:29

I have a table with a column used to order the rows. I need to be able to re-sequence that column, while honoring the (sometimes out of order) existing data.

Here's my starting data:

...

ANSWER

Answered 2020-Nov-22 at 03:34

Use an updatable CTE:

Source https://stackoverflow.com/questions/64950379

QUESTION

Python for-loop stopping prematurely

Asked 2020-Oct-27 at 11:15

I'm trying to convert a DNA sequence to an amino acid sequence. I have a dictionary of codons:

...

ANSWER

Answered 2020-Oct-26 at 02:52

if codon_mapping[mySeq[n:n+3]] != '*':
    translated += codon_mapping[mySeq[n:n+3]]
if codon_mapping[seq[n:n+3]] == '*':
    break

Source https://stackoverflow.com/questions/64530837

QUESTION

ggplot for objects stored in an 3D array

Asked 2020-Oct-20 at 23:24

I have written a following code that is working and plotting what I want, but if I wanted to use ggplot for plotting, how could I have done it?

...

ANSWER

Answered 2020-Oct-20 at 23:24

ggplot2 prefers data frames, and for something like this, frames in a long format.

Here's a basic way to do it.

First, reproducible random data.

Source https://stackoverflow.com/questions/64454033

QUESTION

Rendering a matplotlib image into flask

Asked 2020-Aug-06 at 14:10

I have a python script that generates an image for the protein domains using dna_feature_viewer and works fine. I am working with flask and want to display this image in a webpage.

I attach below the script:

...

ANSWER

Answered 2020-Aug-06 at 14:10

I was unable to re-create this exception, so I assume it may be something specific to your environment.

I tested this in the official python docker image, running within Docker Desktop on OSX.

That said, there are some issues with your flask code which I'll cover here. Towards the end of your image function you should probably be doing something more like:

Source https://stackoverflow.com/questions/63266103

QUESTION

How to check if a numpy array is inside a Python sequence?

Asked 2020-Apr-30 at 21:28

I'd like to check if a given array is inside a regular Python sequence (list, tuple, etc). For example, consider the following code:

...

ANSWER

Answered 2020-Apr-30 at 20:52

This is probably not the most beatiful or fasted solution, but I think it works:

Source https://stackoverflow.com/questions/61532073

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install myseq

MySeq is deployed at https://go.middlebury.edu/myseq. Get started by doing one of 1) selecting a local VCF file and its index file, 2) providing a URL to a VCF file, or 3) selecting one of the pre-configured VCF files (Genome in a Bottle variant calls for NA12878/HG001). Check out a video demonstrating MySeq's features with variant calls from NA12878.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: