npsv | Non-parametric structural variant genotyper | Genomics library

by mlinderm Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | npsv Summary

npsv is a Python library typically used in Artificial Intelligence, Genomics applications. npsv has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

NPSV is a Python-based tool for stand-alone genotyping of previously detected/reported deletion and insertion structural variants (SVs) in short-read whole genome sequencing (WGS) data. NPSV implements a machine learning-based approach for SV genotyping that employs NGS simulation to model the combined effects of the genomic region, sequencer and alignment pipeline.

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Quality

Security

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Support

npsv has a low active ecosystem.

It has 9 star(s) with 0 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

npsv has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of npsv is current.

Quality

npsv has no bugs reported.

Security

npsv has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

npsv is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

npsv releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed npsv and discovered the below as its top functions. This is intended to give you an instant insight into npsv implemented functionality, and help decide if they suit your requirements.

Create an argument parser
Add random options
Add data options to an argparse parser
Adds feature options to an argparse parser
Add genotyping options
Simulate a variant
Print features
Generate random variants
Calculate coverage depth for a given region
Extract features from SVs
Generate genotype VCF
Logistic regression
Convert pred to VCF format
Add derived features
Add options to the argument parser
Filter variants based on input VCF
Generate random variants from a VCF file
Adds random options
Convert a VCF file to a VCF file
Run CMake
Run build
Calculate the GC fraction of the reference sequence
Adds data options to an argparse parser
Propose variants from a VCF file
Create a Histogram from a JSON file
Refine variants from a VCF file
Extract features from a VCF file
Adds genotyping options
Generate plots for features
Compute coverage statistics for a BAM file
Add feature options to an argparse parser

Get all kandi verified functions for this library.

npsv Key Features

No Key Features are available at this moment for npsv.

npsv Examples and Code Snippets

No Code Snippets are available at this moment for npsv.

Community Discussions

Trending Discussions on npsv

How to e-mail the entire excel file through VBA script

Using .bat file and task scheduler for execution of .vbs file

QUESTION

How to e-mail the entire excel file through VBA script

Asked 2020-Feb-22 at 09:17

I wish to automate emailing of my excel file which is currently being performed by me manually

I have the following flow structure: Task scheduler -> .bat file -> VBA script -> excel formulas

This means that my task scheduler will hit .bat file which would trigger VB file to execute the code and this will dump data from SQL DB into Excel file and then formulas inside of Excel file will prepare charts and graphs and all the calculations.

Here is my code of VB file:

...

ANSWER

Answered 2019-May-01 at 15:23

This depends heavily on how you want to send the email. Are you using outlook or are you trying to send it through gmail, yahoo or a private smtp server?

Regardless, I would put the vba code to send the file in the module of the excel file. The bat file calls Macro1 to update the workbook and then runs the macro code inside the module in the workbook. Make sure the code is in a module, not in any of the sheets or workbook. If you are using outlook to email, the code inside the module should look something like this with the Outlook Application module loaded in the library references:

Source https://stackoverflow.com/questions/55937623

QUESTION

Using .bat file and task scheduler for execution of .vbs file

Asked 2019-Apr-25 at 14:01

My Below Code is Running properly.

1.) Can someone help me know how to use task scheduler to schedule this VBS file?

2.) Also i would like to understand writing the .bat file for the execution of this script.

See the code below:

...

ANSWER

Answered 2019-Apr-04 at 19:00

You have to follow several steps do this to achieve your goal.

First, you set up your function in your Workbook_Open():

Source https://stackoverflow.com/questions/55519328

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install npsv

When cloning NPSV, make sure to recursively clone all of the submodules, i.e. git clone --recursive git@github.com:mlinderm/npsv.git.
To manually install and run NPSV from the source, you will need the following dependencies:.
ART (NGS simulator)
bwa
bedtools
bcftools
goleft
htslib (i.e., tabix and bgzip)
samblaster
sambamba
samtools

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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