LINKS | Long Interval Nucleotide K-mer Scaffolder | Genomics library

 by   bcgsc Perl Version: v2.0.1 License: GPL-3.0

kandi X-RAY | LINKS Summary

kandi X-RAY | LINKS Summary

LINKS is a Perl library typically used in Artificial Intelligence, Genomics applications. LINKS has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

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              LINKS has a low active ecosystem.
              It has 66 star(s) with 14 fork(s). There are 10 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 0 open issues and 56 have been closed. On average issues are closed in 120 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of LINKS is v2.0.1

            kandi-Quality Quality

              LINKS has 0 bugs and 0 code smells.

            kandi-Security Security

              LINKS has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              LINKS code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              LINKS is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              LINKS releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of LINKS
            Get all kandi verified functions for this library.

            LINKS Key Features

            No Key Features are available at this moment for LINKS.

            LINKS Examples and Code Snippets

            Links two elements .
            javadot img1Lines of Code : 16dot img1License : Permissive (MIT License)
            copy iconCopy
            private HeapNode link(HeapNode c1, HeapNode c2) {
                    if (c1.getKey() > c2.getKey()) {
                        HeapNode c3 = c1;
                        c1 = c2;
                        c2 = c3;
                    }
                    if (c1.child == null) {
                        c1.child = c2;
                    } else   
            Prints links in reverse order
            pythondot img2Lines of Code : 10dot img2License : Permissive (MIT License)
            copy iconCopy
            def main():
                from doctest import testmod
            
                testmod()
            
                linked_list = make_linked_list([14, 52, 14, 12, 43])
                print("Linked List:")
                print(linked_list)
                print("Elements in Reverse:")
                print_reverse(linked_list)  
            Gets links from a resource .
            pythondot img3Lines of Code : 4dot img3License : Permissive (MIT License)
            copy iconCopy
            def get_img_links(res):
                soup = BeautifulSoup(res, "lxml")
                imglinks = soup.find_all("img", src=True)
                return imglinks  

            Community Discussions

            QUESTION

            I can't update my webapp to Spring Boot 2.6.0 (2.5.7 works but 2.6.0 doesn't)
            Asked 2022-Apr-05 at 04:24

            As mentioned in the title I can't update my webapp to Spring Boot 2.6.0. I wrote my webapp using Spring Boot 2.5.5 and everything works perfectly. If I update the pom.xml file with this new tag:

            ...

            ANSWER

            Answered 2021-Nov-23 at 00:04

            Starting on Spring Boot 2.6, circular dependencies are prohibited by default. you can allow circular references again by setting the following property:

            Source https://stackoverflow.com/questions/70073748

            QUESTION

            What is a good technique for compile-time detection of mismatched preprocessor-definitions between library-code and user-code?
            Asked 2022-Apr-04 at 16:07

            Motivating background info: I maintain a C++ library, and I spent way too much time this weekend tracking down a mysterious memory-corruption problem in an application that links to this library. The problem eventually turned out to be caused by the fact that the C++ library was built with a particular -DBLAH_BLAH compiler-flag, while the application's code was being compiled without that -DBLAH_BLAH flag, and that led to the library-code and the application-code interpreting the classes declared in the library's header-files differently in terms of data-layout. That is: sizeof(ThisOneParticularClass) would return a different value when invoked from a .cpp file in the application than it would when invoked from a .cpp file in the library.

            So far, so unfortunate -- I have addressed the immediate problem by making sure that the library and application are both built using the same preprocessor-flags, and I also modified the library so that the presence or absence of the -DBLAH_BLAH flag won't affect the sizeof() its exported classes... but I feel like that wasn't really enough to address the more general problem of a library being compiled with different preprocessor-flags than the application that uses that library. Ideally I'd like to find a mechanism that would catch that sort of problem at compile-time, rather than allowing it to silently invoke undefined behavior at runtime. Is there a good technique for doing that? (All I can think of is to auto-generate a header file with #ifdef/#ifndef tests for the application code to #include, that would deliberately #error out if the necessary #defines aren't set, or perhaps would automatically-set the appropriate #defines right there... but that feels a lot like reinventing automake and similar, which seems like potentially opening a big can of worms)

            ...

            ANSWER

            Answered 2022-Apr-04 at 16:07

            One way of implementing such a check is to provide definition/declaration pairs for global variables that change, according to whether or not particular macros/tokens are defined. Doing so will cause a linker error if a declaration in a header, when included by a client source, does not match that used when building the library.

            As a brief illustration, consider the following section, to be added to the "MyLibrary.h" header file (included both when building the library and when using it):

            Source https://stackoverflow.com/questions/71737118

            QUESTION

            Error: useHref() may be used only in the context of a component. It works when I directly put the url as localhost:3000/experiences
            Asked 2022-Mar-30 at 02:44

            I have a navbar that is rendered in every route while the route changes on click.

            ./components/navbar.jsx

            ...

            ANSWER

            Answered 2022-Feb-09 at 23:28
            Issue

            You are rendering the navbar outside the routing context. The Router isn't aware of what routes the links are attempting to link to that it is managing. The reason routing works when directly navigating to "/experiences" is because the Router is aware of the URL when the app mounts.

            Source https://stackoverflow.com/questions/70220413

            QUESTION

            What is jsconfig.json
            Asked 2022-Mar-29 at 17:49

            If i search the same question on the internet, then i'll get only links to vscode website ans some blogs which implements it.

            I want to know that is jsconfig.json is specific to vscode or javascript/webpack?

            What will happen if we deploy the application on AWS / Heroku, etc. Do we have to make change?

            ...

            ANSWER

            Answered 2021-Aug-06 at 04:10

            This is definitely specific to VSCode.

            The presence of jsconfig.json file in a directory indicates that the directory is the root of a JavaScript Project. The jsconfig.json file specifies the root files and the options for the features provided by the JavaScript language service.

            Check more details here: https://code.visualstudio.com/docs/languages/jsconfig

            You don't need this file when deploy it on AWS/Heroku, basically, you can exclude this from your commit if you are using git repo, i.e., add jsconfig.json in your .gitignore, this will make your project IDE independent.

            Source https://stackoverflow.com/questions/68675994

            QUESTION

            Different behaviour in C++ std::vector construction with gcc and clang
            Asked 2022-Mar-12 at 18:43

            In the example below I am expecting v to have 1 element, whos var will be of type Vector and will contain two "int" Variants 10 and 20. This is the behaviour I can see with gcc.

            With clang, 'v' contains two elements which are the two "int" Variants 10 and 20.

            I think gcc's vector is created via the initializer_list constructor while clang's via the move constructor

            Is this a bug in one of the compilers? Do I need to make the Variant's constructors explicit (which will force me to use it like Variant::Vector v{Variant{Variant::Vector{10, 20}}};. Is there any other way to avoid this issue if I want to keep the constructors non explicit?

            Tried this code with all gcc and clang versions in https://wandbox.org/ and it behaves the same. Here are some links to try it directly: gcc, clang

            ...

            ANSWER

            Answered 2022-Mar-12 at 18:43

            This is CWG 2137, which only gcc implements at present.

            Clang bug: https://github.com/llvm/llvm-project/issues/24186

            See also C++ constructor taking an std::initializer_list of size one - this is slightly more complicated in that the initializer list element is constructible from its argument (of the type being initialized), but the diagnosis is the same, and I can't do any better than T.C.'s description:

            Clang implemented DR 1467 (brace-initializing a T from a T behaves as if you didn't use braces) but has yet to implement DR 2137 (on second thought, do that only for aggregates).

            If you're OK changing your program syntax slightly, you could add another level of braces:

            Source https://stackoverflow.com/questions/71451712

            QUESTION

            Can I create a function which takes any number of arguments of the same type?
            Asked 2022-Jan-24 at 03:55

            So basically, I want to create a function like this:

            ...

            ANSWER

            Answered 2021-Nov-18 at 03:39

            In C++11 and newer you can use template parameter packs to create a recursive implementation, like this:

            Source https://stackoverflow.com/questions/70014236

            QUESTION

            Error about Android Studio on Macbook M1: An error occurred while trying to compute required packages
            Asked 2022-Jan-16 at 04:00

            I've downloaded Android Studio from the official website, the one for M1 chip (arm).

            Basically running it for the first time, the error is the following:

            ...

            ANSWER

            Answered 2021-Nov-07 at 09:40

            This is what solved it for me on my M1.

            1. Go to Android Studio Preview and download the latest Canary build for Apple chip (Chipmunk). Don't worry this is just to get through the initial setup.
            2. Unpack it, run it, let it install all the SDK components, accept licenses, etc as usual.
            3. Once it's done, simply close it and delete it.

            Now when you start your stable Android Studio (Arctic Fox) you should not see the error.

            Source https://stackoverflow.com/questions/69869181

            QUESTION

            Can't change frame size of LPLinkView in a SwiftUI List
            Asked 2021-Dec-30 at 00:02

            I am trying to display rich links in a SwiftUI List and no matter what I try, I can't seem to be able to change the size of the link view (UIViewRepresentable) on screen.

            Is there a minimum size for a particular link? And how can I get it. Adding .aspectRatio and clipped() will respect size but the link is heavily clipped. Not sure why the link will not adjust aspectRatio to fit view.

            Some of the following code is sourced from the following tutorial: https://www.appcoda.com/linkpresentation-framework/

            I am using the following UIViewRepresentable for the LinkView:

            ...

            ANSWER

            Answered 2021-Dec-29 at 13:24

            The solution that worked for me was subclassing the linkView overriding the intrinsic content size. Thanks to user1046037's comment, using super.intrinsicContentSize.height will enable it to work dynamically.

            Source https://stackoverflow.com/questions/70212090

            QUESTION

            .NET Core/System.Text.Json: Enumerate and add/replace json properties/values
            Asked 2021-Dec-13 at 09:56

            In an earlier question of mine I asked how to populate an existing object using System.Text.Json.

            One of the great answers showed a solution parsing the json string with JsonDocument and enumerate it with EnumerateObject.

            Over time my json string evolved and does now also contain an array of objects, and when parsing that with the code from the linked answer it throws the following exception:

            ...

            ANSWER

            Answered 2021-Dec-12 at 17:26

            After further consideration, I think a simpler solution for replacement should be using C# Reflection instead of relying on JSON. Tell me if it does not satisfy your need:

            Source https://stackoverflow.com/questions/70190038

            QUESTION

            How can I get notified when money has been sent to a particular Bitcoin address on a local regtest network?
            Asked 2021-Nov-18 at 19:39

            I want to programmatically detect whenever someone sends Bitcoin to some address. This happens on a local testnet which I start using this docker-compose.yml file.

            Once the local testnet runs, I create a new address using

            ...

            ANSWER

            Answered 2021-Nov-18 at 19:39

            I haven't tested your full setup with electrumx and the ethereum stuff present in your docker-compose file, but regarding your problem, the following steps worked properly, and I think it will do as well in your complete setup.

            I ran with docker a bitcoin node based in the ulamlabs/bitcoind-custom-regtest:latest image you provided:

            Source https://stackoverflow.com/questions/69764709

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install LINKS

            You can download it from GitHub.

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