vcf2maf | Convert a VCF into a MAF , where each variant | Genomics library

by mskcc Perl Version: v1.6.21 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | vcf2maf Summary

vcf2maf is a Perl library typically used in Artificial Intelligence, Genomics applications. vcf2maf has no bugs, it has no vulnerabilities and it has low support. However vcf2maf has a Non-SPDX License. You can download it from GitHub.

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Support

Quality

Security

License

Reuse

Support

vcf2maf has a low active ecosystem.

It has 316 star(s) with 206 fork(s). There are 81 watchers for this library.

It had no major release in the last 12 months.

There are 77 open issues and 223 have been closed. On average issues are closed in 150 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of vcf2maf is v1.6.21

Quality

vcf2maf has 0 bugs and 0 code smells.

Security

vcf2maf has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

vcf2maf code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

vcf2maf has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

vcf2maf releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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vcf2maf Key Features

No Key Features are available at this moment for vcf2maf.

vcf2maf Examples and Code Snippets

No Code Snippets are available at this moment for vcf2maf.

Community Discussions

Trending Discussions on vcf2maf

GNU parallel read from several files

How to refer to executable inside anaconda environment in Snakemake

QUESTION

GNU parallel read from several files

Asked 2020-Aug-14 at 22:21

I am trying to use GNU parallel to convert individual files with a bioinformatic tool called vcf2maf.

My command looks something like this:

...

ANSWER

Answered 2020-Aug-14 at 22:21

For a command this long I would normally define a function:

Source https://stackoverflow.com/questions/63032626

QUESTION

How to refer to executable inside anaconda environment in Snakemake

Asked 2020-Feb-26 at 19:58

I'm using vcf2maf to annotate variants as part of a snakemake pipeline

...

ANSWER

Answered 2020-Jan-21 at 12:22

You could use the unix which command like:

Source https://stackoverflow.com/questions/59838157

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install vcf2maf

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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