DeepMod | learning tool | Genomics library
kandi X-RAY | DeepMod Summary
kandi X-RAY | DeepMod Summary
DeepMod is a Python library typically used in Artificial Intelligence, Genomics applications. DeepMod has no bugs, it has no vulnerabilities, it has build file available and it has low support. However DeepMod has a Non-SPDX License. You can download it from GitHub.
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
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DeepMod has a low active ecosystem.
It has 62 star(s) with 30 fork(s). There are 6 watchers for this library.
It had no major release in the last 12 months.
There are 7 open issues and 35 have been closed. On average issues are closed in 170 days. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of DeepMod is v0.1.3
Quality
DeepMod has 0 bugs and 0 code smells.
Security
DeepMod has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
DeepMod code analysis shows 0 unresolved vulnerabilities.
There are 0 security hotspots that need review.
License
DeepMod has a Non-SPDX License.
Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.
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DeepMod releases are available to install and integrate.
Build file is available. You can build the component from source.
Installation instructions are available. Examples and code snippets are not available.
It has 2904 lines of code, 68 functions and 13 files.
It has low code complexity. Code complexity directly impacts maintainability of the code.
Top functions reviewed by kandi - BETA
kandi has reviewed DeepMod and discovered the below as its top functions. This is intended to give you an instant insight into DeepMod implemented functionality, and help decide if they suit your requirements.
- Summarize prediction files
- Read a prediction file from a CIF file
- Read prediction detail from a saved prediction file
- Get a feature manager
- Read FASTA file
- Read motif from fadict
- Detect common parameters
- Helper function to create common parameters
- Format the last letter of a folder
- Get event info
- Returns the indices of the maximal N - splits
- Runs the detection
- Calculate the event info
- Calculate the scaled shift scale matrix
- Add pred_list to pred_list
- Read the genome from a MAF file
- Perform prediction
- Get feature handler
- Handles sum_amod
- Detect multiprocessing models
- Read a dictionary from a modf dictionary
- Read predmod file
- Multivariate RSTM training
- Read a cpgdict from a modf file
- Read a FFA file
- Train a deep model
- Get the features for each motif
Get all kandi verified functions for this library.
DeepMod Key Features
No Key Features are available at this moment for DeepMod.
DeepMod Examples and Code Snippets
No Code Snippets are available at this moment for DeepMod.
Community Discussions
Trending Discussions on DeepMod
QUESTION
How to find the value inside an array with objects with the most occuring value (deep mode)?
Asked 2018-Nov-12 at 11:07
Let's say I have an array with objects like this:
...ANSWER
Answered 2018-Nov-12 at 10:53You could reduce into a Map, find the max, then find and return it.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install DeepMod
Please refer to Installation for how to install DeepMod.
Support
If you have any questions/issues/bugs, please post them on GitHub. They would also be helpful to other users.
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