InterVar | bioinformatics software tool for clinical interpretation | Genomics library

by WGLab Python Version: v2.2.1 License: No License

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | InterVar Summary

InterVar is a Python library typically used in Artificial Intelligence, Genomics applications. InterVar has no bugs, it has no vulnerabilities and it has low support. However InterVar build file is not available. You can download it from GitHub.

A bioinformatics software tool for clinical interpretation of genetic variants by the ACMG-AMP 2015 guidelines.

Support

Quality

Security

License

Reuse

Support

InterVar has a low active ecosystem.

It has 162 star(s) with 92 fork(s). There are 29 watchers for this library.

It had no major release in the last 12 months.

There are 48 open issues and 41 have been closed. On average issues are closed in 44 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of InterVar is v2.2.1

Quality

InterVar has 0 bugs and 0 code smells.

Security

InterVar has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

InterVar code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

InterVar does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

InterVar releases are available to install and integrate.

InterVar has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 1648 lines of code, 43 functions and 1 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed InterVar and discovered the below as its top functions. This is intended to give you an instant insight into InterVar implemented functionality, and help decide if they suit your requirements.

This function takes an annovar output file
R Check the BP1 gene
Checks if the BAM file is valid
Assign SNP genotypes
Reads the user - specified evidence file
Flips the acgt
Extracts the genes from the vcf file
Check to see if downdb exists
Check the annovar results
Check if the input file is valid
Returns a section of a config section

Get all kandi verified functions for this library.

InterVar Key Features

No Key Features are available at this moment for InterVar.

InterVar Examples and Code Snippets

No Code Snippets are available at this moment for InterVar.

Community Discussions

Trending Discussions on InterVar

Split space- and equal-separated string into different columns

Python: unsupported format character ''' (0x27) at index 350

How to calculate the sum of the numbers in character column in R?

QUESTION

Split space- and equal-separated string into different columns

Asked 2021-Sep-26 at 19:51

I have a dataset.

...

ANSWER

Answered 2021-Sep-20 at 09:32

Perhaps you could try some thing like this, with dplyr, tidyr and stringr :

Source https://stackoverflow.com/questions/69251552

QUESTION

Python: unsupported format character ''' (0x27) at index 350

Asked 2021-May-28 at 07:18

I've got this error using the MySQL db backend for django.

The query I'm trying to execute (it worked perfectly with MariaDB connector):

...

ANSWER

Answered 2021-May-28 at 07:18

Django does not use ? for the parameterization, rather it uses format string style parameters, i.e. '%s' % 'hello', etc. See Passing parameters into raw [Django docs].

It looks like you want to make a query of the form LIKE '%', firstly do not use ? (use %s instead), next instead of trying to concatenate in the query concatenate in python itself.

Hence you query should be like (Truncated irrelevant parts):

Source https://stackoverflow.com/questions/67731834

QUESTION

How to calculate the sum of the numbers in character column in R?

Asked 2021-Apr-23 at 01:50

I have a dataset, a column of which was like this:

...

ANSWER

Answered 2021-Apr-21 at 08:33

Here's a stringr approach in steps:

Source https://stackoverflow.com/questions/67191440

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install InterVar

You can download it from GitHub.
You can use InterVar like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: