rosalind | : question : Solutions to bioinformatics problems | Genomics library
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kandi X-RAY | rosalind Summary
:question: Solutions to bioinformatics problems.
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- Parse DNA sequence .
- get the complement of a c
- R bunny function
- Convert a string into RNA sequences .
- Reverse complement a string
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QUESTION
I'm tinkering with Rust by building some basic genetics functionality, e.g. read a file with a DNA sequence, transcribe it to RNA, translate it to an amino acid sequence, etc.
I'd like each of these transformations to accept and return iterators. That way I can string them together (like dna.transcribe().traslate()...
) and only collect when necessary, so the compiler can optimize the entire chain of transormations. I'm a data scientist coming from Scala/Spark, so this pattern makes a lot of sense, but I'm not sure how to implement it Rust.
I've read this article about returning iterators but the final solution seems to be to use trait objects (with possibly large performance impact), or to hand roll iterators with associated structs (which allows me to return an iterator, yes, but I don't see how it would allow me to write a transformation that also accepts an iterator).
Any general architectural advice here?
(FYI, my code so far is available here, but I feel like I'm not using Rust idiomatically because a. still can't quite get it to compile b. this pattern of lazily chaining operations has led to unexpectedly complex and messy code that only works on Rust nightly.)
...ANSWER
Answered 2021-Nov-01 at 18:08Iterator adaptors are meant to do operations which can't easily be expressed otherwise. Your two examples, .translate()
, and .transcribe()
, given your explanation of them, could be simplified to the following:
QUESTION
I have a complex component with some "dynamic" imports.
I recreate my component tree on codesandbox: https://codesandbox.io/s/clever-rosalind-t3cfm?file=/src/App.js:298-302
I have an App.js
file where I have a list of objects. Each object, render a RenderWidget
component.
Inside RenderWidget
, I need to get a "dynamic" comp. (I recreated that with a simple function, but i have more complexity in that part). So I wrapped the comp on useMemo to avoid component re-creation. (useMemo has a console.log to check if the Comp
is re-initializated)
Inside the Comp
, we have a useState declaration with the following initial value:
ANSWER
Answered 2021-Apr-22 at 09:51If parent component props have changed it will re-render all of its children, you can use React.memo
to prevent unnecessary re-render.
I also suggest you to read this article, it's written by the author of the react core team, in addition to memo, there are other ways to prevent re-rendering
QUESTION
I have a ReactJS code (attached at the end of the post) where my objective is to find a good way to be able to "communicate" between some nested elements (I've tried to do a very simple code to explain my idea).
The columns are "hierarchy" based, so you have to active "A) Parent" before being able to active "A) Child 1". The main objective is to be able to "disable" (basically, set the state 'active' into false) an element when:
- Some element of a "different column" is active
- Some element of the same column and "depth" is active
Some examples based on the code:
- Disable 'A) Parent' when 'B) Parent' is turned active.
- Disable 'A) Child 1' when 'A) Child 2' is turned active.
- Disable 'A) Child 1' (and 'A) Parent') when 'B) Parent' is turned active.
In this last example, we are also disabling the "ancestors" (since this "works" as a nested structure, where you have to turn on A) Parent to be able to turn on A) Child X ).
As you can see, the idea is to work on a depth level.. Where when you "enter" in another "path", the current active path should be disabled.
I've been trying some methods, but none of them have worked properly. I think they are "expensive" and zero elegant.
My approaches have been something similar to this:
- Give a "depth var" on each element.
- Set a "current" var (useState) to App (root) and pass the "setCurrent" to each element.
- Use a "useEffect" hook inside each looking for changes on current.
- Then, conditionally try to manage them.
As I have said.. I'm pretty sure there are better methods to do this.. But I can't get with them.
Here is the code (for the example, I've tried to do the most simple setup without depth restriction, but remember that you have to "active" the ancestor before being able to "active" the descendant): https://codesandbox.io/s/optimistic-rosalind-1oykv?file=/src/App.js
...ANSWER
Answered 2021-Apr-21 at 17:43As @Shawn Yap has mentioned in the comments, finally I've opted for using Context Api.
Basically the idea is the following (very simplified):
Create a React Context:
QUESTION
Hello let's take this example :
...ANSWER
Answered 2021-Apr-20 at 16:18When it comes to performance, I always find that vanilla JS is faster than any library implementation. So I always prefer vanilla JS for this reason. Here, a non-lodash.js solution, that places the desired values into the array, though you can simply deep-clone your original array:
QUESTION
I have a simple form and a field to render the value of that input field from that form
...ANSWER
Answered 2021-Apr-08 at 01:19The problem comes from the behavior of the input
event. The instance of InputEvent
comes with the corresponding input element as target
, even if you add a listener on the form element.
So, simply rewrite your code as:
QUESTION
I'm learning Haskell and working on a Hamming distance exercise.
...ANSWER
Answered 2021-Mar-01 at 00:46This error isn't anything to do with your guards - it's much more basic than that.
You have:
QUESTION
Good day guys! I want to do mouseover effect like in this video in my vue project. I tried some code but property transform
changed just once. If someone knows, please help me. thats codesandbox.io code. I copied just a part of my code which doesn't work.
ANSWER
Answered 2021-Jan-31 at 16:54I think better to use the npm library for it with the name vue-kinesis
.
But if you want to use your variant, you need to change line 57:
QUESTION
I have an application where I would like to print the location of the user similar to a breadcrumb. I have a component that I add at the application level and expect it to update with current value or the router.currentRoute
object. However it doesn't seem to be updating as expected.
I'm using the Vue2 Composition api plugin and am trying hard to keep it in a decent state that will make migrating to Vue3 much easier once I'm able. This means I'd like to avoid using the context.$route
object that's available. My attempt currently imports the router directly and wraps the currentRoute
object in a ref()
but that doesn't seem to work.
Here is a CodeSandbox with an application that shows the issue. I have a home page and two additional pages. The text that reads 'Your current location is: Home` should change to the name of the other pages when navigating there, however it does not change at all.
...ANSWER
Answered 2020-Dec-13 at 11:36You could use reactive()
on the router
instance, and then toRef()
on that to get currentRoute
:
QUESTION
Premise:
I am currently working on the following problem:
I must find the index combinations of all occurrences of a substring in a string, where the substring is not necessarily contiguous.
My testing parameters:
...ANSWER
Answered 2020-Nov-21 at 10:28I'm not sure your algorithm could find all solutions even if it would be fixed. I tried this logic instead : Find the initial sequence closest to the left of dna and search all declinations going from right to left recursively. This way the solutions are automatically sorted.
QUESTION
I wanted to disable the check button after it click once and proceeding to next step. I try some other ways like adding the condition in methods but it doesn't work. can anyone guide me? Thank you.
Here is my code:
https://codesandbox.io/s/angry-rosalind-c2dxd?file=/src/App.vue
...ANSWER
Answered 2020-Sep-28 at 06:24
Finish
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