rosalind | : question : Solutions to bioinformatics problems | Genomics library

 by   angusshire Python Version: Current License: GPL-3.0

kandi X-RAY | rosalind Summary

kandi X-RAY | rosalind Summary

rosalind is a Python library typically used in Artificial Intelligence, Genomics applications. rosalind has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has high support. However rosalind build file is not available. You can download it from GitHub.

:question: Solutions to bioinformatics problems.
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            kandi-support Support

              rosalind has a highly active ecosystem.
              It has 21 star(s) with 9 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              rosalind has no issues reported. There are no pull requests.
              It has a positive sentiment in the developer community.
              The latest version of rosalind is current.

            kandi-Quality Quality

              rosalind has 0 bugs and 0 code smells.

            kandi-Security Security

              rosalind has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              rosalind code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              rosalind is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              rosalind releases are not available. You will need to build from source code and install.
              rosalind has no build file. You will be need to create the build yourself to build the component from source.
              rosalind saves you 46 person hours of effort in developing the same functionality from scratch.
              It has 123 lines of code, 8 functions and 9 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed rosalind and discovered the below as its top functions. This is intended to give you an instant insight into rosalind implemented functionality, and help decide if they suit your requirements.
            • Parse DNA sequence .
            • get the complement of a c
            • R bunny function
            • Convert a string into RNA sequences .
            • Reverse complement a string
            Get all kandi verified functions for this library.

            rosalind Key Features

            No Key Features are available at this moment for rosalind.

            rosalind Examples and Code Snippets

            No Code Snippets are available at this moment for rosalind.

            Community Discussions

            QUESTION

            How to apply a series of iterators to data?
            Asked 2021-Nov-01 at 18:36

            I'm tinkering with Rust by building some basic genetics functionality, e.g. read a file with a DNA sequence, transcribe it to RNA, translate it to an amino acid sequence, etc.

            I'd like each of these transformations to accept and return iterators. That way I can string them together (like dna.transcribe().traslate()...) and only collect when necessary, so the compiler can optimize the entire chain of transormations. I'm a data scientist coming from Scala/Spark, so this pattern makes a lot of sense, but I'm not sure how to implement it Rust.

            I've read this article about returning iterators but the final solution seems to be to use trait objects (with possibly large performance impact), or to hand roll iterators with associated structs (which allows me to return an iterator, yes, but I don't see how it would allow me to write a transformation that also accepts an iterator).

            Any general architectural advice here?

            (FYI, my code so far is available here, but I feel like I'm not using Rust idiomatically because a. still can't quite get it to compile b. this pattern of lazily chaining operations has led to unexpectedly complex and messy code that only works on Rust nightly.)

            ...

            ANSWER

            Answered 2021-Nov-01 at 18:08

            Iterator adaptors are meant to do operations which can't easily be expressed otherwise. Your two examples, .translate(), and .transcribe(), given your explanation of them, could be simplified to the following:

            Source https://stackoverflow.com/questions/69800592

            QUESTION

            Re-initialized state
            Asked 2021-Apr-22 at 09:52

            I have a complex component with some "dynamic" imports.

            I recreate my component tree on codesandbox: https://codesandbox.io/s/clever-rosalind-t3cfm?file=/src/App.js:298-302

            I have an App.js file where I have a list of objects. Each object, render a RenderWidget component.

            Inside RenderWidget, I need to get a "dynamic" comp. (I recreated that with a simple function, but i have more complexity in that part). So I wrapped the comp on useMemo to avoid component re-creation. (useMemo has a console.log to check if the Comp is re-initializated)

            Inside the Comp, we have a useState declaration with the following initial value:

            ...

            ANSWER

            Answered 2021-Apr-22 at 09:51

            If parent component props have changed it will re-render all of its children, you can use React.memo to prevent unnecessary re-render.

            I also suggest you to read this article, it's written by the author of the react core team, in addition to memo, there are other ways to prevent re-rendering

            Source https://stackoverflow.com/questions/67210608

            QUESTION

            Good way to interact between different and same levels of depth (nested) in ReactJS ('States' + Hooks)
            Asked 2021-Apr-21 at 17:43

            I have a ReactJS code (attached at the end of the post) where my objective is to find a good way to be able to "communicate" between some nested elements (I've tried to do a very simple code to explain my idea).

            The columns are "hierarchy" based, so you have to active "A) Parent" before being able to active "A) Child 1". The main objective is to be able to "disable" (basically, set the state 'active' into false) an element when:

            • Some element of a "different column" is active
            • Some element of the same column and "depth" is active

            Some examples based on the code:

            • Disable 'A) Parent' when 'B) Parent' is turned active.
            • Disable 'A) Child 1' when 'A) Child 2' is turned active.
            • Disable 'A) Child 1' (and 'A) Parent') when 'B) Parent' is turned active.

            In this last example, we are also disabling the "ancestors" (since this "works" as a nested structure, where you have to turn on A) Parent to be able to turn on A) Child X ).

            As you can see, the idea is to work on a depth level.. Where when you "enter" in another "path", the current active path should be disabled.

            I've been trying some methods, but none of them have worked properly. I think they are "expensive" and zero elegant.

            My approaches have been something similar to this:

            • Give a "depth var" on each element.
            • Set a "current" var (useState) to App (root) and pass the "setCurrent" to each element.
            • Use a "useEffect" hook inside each looking for changes on current.
            • Then, conditionally try to manage them.

            As I have said.. I'm pretty sure there are better methods to do this.. But I can't get with them.

            Here is the code (for the example, I've tried to do the most simple setup without depth restriction, but remember that you have to "active" the ancestor before being able to "active" the descendant): https://codesandbox.io/s/optimistic-rosalind-1oykv?file=/src/App.js

            ...

            ANSWER

            Answered 2021-Apr-21 at 17:43

            As @Shawn Yap has mentioned in the comments, finally I've opted for using Context Api.

            Basically the idea is the following (very simplified):

            1. Create a React Context:

            Source https://stackoverflow.com/questions/67141220

            QUESTION

            How to pass a property from an array to each of it nested child array with lodash?
            Asked 2021-Apr-20 at 16:18

            Hello let's take this example :

            ...

            ANSWER

            Answered 2021-Apr-20 at 16:18

            When it comes to performance, I always find that vanilla JS is faster than any library implementation. So I always prefer vanilla JS for this reason. Here, a non-lodash.js solution, that places the desired values into the array, though you can simply deep-clone your original array:

            Source https://stackoverflow.com/questions/67182394

            QUESTION

            input event changes after the event handler being debounced
            Asked 2021-Apr-08 at 01:19

            I have a simple form and a field to render the value of that input field from that form

            ...

            ANSWER

            Answered 2021-Apr-08 at 01:19

            The problem comes from the behavior of the input event. The instance of InputEvent comes with the corresponding input element as target, even if you add a listener on the form element.

            So, simply rewrite your code as:

            Source https://stackoverflow.com/questions/66995972

            QUESTION

            Non-exhaustive patterns in function distance error stemming from where statement that shouldn't be reached
            Asked 2021-Mar-01 at 00:46

            I'm learning Haskell and working on a Hamming distance exercise.

            ...

            ANSWER

            Answered 2021-Mar-01 at 00:46

            This error isn't anything to do with your guards - it's much more basic than that.

            You have:

            Source https://stackoverflow.com/questions/66415242

            QUESTION

            Mouseover parallax effect on Vue.js
            Asked 2021-Feb-01 at 09:14

            Good day guys! I want to do mouseover effect like in this video in my vue project. I tried some code but property transform changed just once. If someone knows, please help me. thats codesandbox.io code. I copied just a part of my code which doesn't work.

            ...

            ANSWER

            Answered 2021-Jan-31 at 16:54

            I think better to use the npm library for it with the name vue-kinesis.

            But if you want to use your variant, you need to change line 57:

            Source https://stackoverflow.com/questions/65980986

            QUESTION

            Reactive Vue Router object by wrapping in ref() not working
            Asked 2020-Dec-13 at 11:36

            I have an application where I would like to print the location of the user similar to a breadcrumb. I have a component that I add at the application level and expect it to update with current value or the router.currentRoute object. However it doesn't seem to be updating as expected.

            I'm using the Vue2 Composition api plugin and am trying hard to keep it in a decent state that will make migrating to Vue3 much easier once I'm able. This means I'd like to avoid using the context.$route object that's available. My attempt currently imports the router directly and wraps the currentRoute object in a ref() but that doesn't seem to work.

            Here is a CodeSandbox with an application that shows the issue. I have a home page and two additional pages. The text that reads 'Your current location is: Home` should change to the name of the other pages when navigating there, however it does not change at all.

            ...

            ANSWER

            Answered 2020-Dec-13 at 11:36

            You could use reactive() on the router instance, and then toRef() on that to get currentRoute:

            Source https://stackoverflow.com/questions/65210203

            QUESTION

            How to find all occurrences of a non - contiguous substring in Python?
            Asked 2020-Nov-21 at 12:55

            Premise:

            I am currently working on the following problem:

            http://rosalind.info/problems/sseq/

            I must find the index combinations of all occurrences of a substring in a string, where the substring is not necessarily contiguous.

            My testing parameters:

            ...

            ANSWER

            Answered 2020-Nov-21 at 10:28

            I'm not sure your algorithm could find all solutions even if it would be fixed. I tried this logic instead : Find the initial sequence closest to the left of dna and search all declinations going from right to left recursively. This way the solutions are automatically sorted.

            Source https://stackoverflow.com/questions/64862256

            QUESTION

            Disable Check Button in Buefy Steps after clicking the check button once and proceeding to next step
            Asked 2020-Sep-28 at 06:24

            I wanted to disable the check button after it click once and proceeding to next step. I try some other ways like adding the condition in methods but it doesn't work. can anyone guide me? Thank you.

            Here is my code:

            https://codesandbox.io/s/angry-rosalind-c2dxd?file=/src/App.vue

            ...

            ANSWER

            Answered 2020-Sep-28 at 06:24
            
              
                
                  
                    
                    
            
                    
                    
            
                    
                    
            
                    
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            Check

            Source https://stackoverflow.com/questions/64096405

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            Vulnerabilities

            No vulnerabilities reported

            Install rosalind

            You can download it from GitHub.
            You can use rosalind like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

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