hgvs | Python library to parse format validate normalize | Genomics library
kandi X-RAY | hgvs Summary
kandi X-RAY | hgvs Summary
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Top functions reviewed by kandi - BETA
- Decorator for lru_cache
- Saves the configuration to disk
- Normalize a variant variant
- Get the boundary of a variant
- Fetch a sequence from a given chromosome
- Get the total transcript length for a given variant
- Perform variant context w alignment
- Generate a full house
- Return a list of all transcripts for a variant
- Retrieve transcript exons associated with a transcript
- Get a cursor
- Connect to NCBI
- Return a function that can be used to parse a string
- Include delins
- Get information about a particular transcript
- Convert a cDNA variant from a cDNA variant
- Convert cDNA to nucleotides
- Convert an n_to_c into a C variant
- Get all similar transcripts for a given transcript
- Validate a variant variant
- Get the mapping options for a transaction
- Retrieve transcript identity information
- Incorporate dup sequence
- Incorporate inv into sequence
- Get information about a gene
- Convert g from g to T
- Return a list of transcripts for a variant
hgvs Key Features
hgvs Examples and Code Snippets
Community Discussions
Trending Discussions on hgvs
QUESTION
I've got the following data frame:
...ANSWER
Answered 2022-Mar-03 at 10:21Here is a potential solution:
QUESTION
For example, one column of the table I have is like this
...ANSWER
Answered 2022-Feb-13 at 21:05Here is a base R way with substr
.
QUESTION
For example, in the column I have, there is a line written 'Ser25Phe'
. And I want to split the column HGVS.Consequence
e.g. as 'Ser 25 Phe'
...
ANSWER
Answered 2022-Feb-12 at 11:29Using gsub
, assuming that e.g. "AsAsp"
should also be split into "As Asp"
.
QUESTION
I wonder to append listB to listA
input
...ANSWER
Answered 2021-Nov-24 at 06:07listA.extend(listB)
should work, but it modifies the original listA
. If you want sum_list
to be a different list, you can copy it first with something like
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install hgvs
You can use hgvs like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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