uta | Universal Transcript Archive : comprehensive genome | Genomics library

 by   biocommons Python Version: Current License: Apache-2.0

kandi X-RAY | uta Summary

kandi X-RAY | uta Summary

uta is a Python library typically used in Artificial Intelligence, Genomics applications. uta has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
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            kandi-support Support

              uta has a low active ecosystem.
              It has 39 star(s) with 19 fork(s). There are 8 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 30 open issues and 193 have been closed. On average issues are closed in 404 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of uta is current.

            kandi-Quality Quality

              uta has 0 bugs and 0 code smells.

            kandi-Security Security

              uta has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              uta code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              uta is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              uta releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed uta and discovered the below as its top functions. This is intended to give you an instant insight into uta implemented functionality, and help decide if they suit your requirements.
            • Load TxInfo from file
            • Decorator for lru_cache
            • Inserts an exon set record
            • Return the exons as a string
            • Align exons
            • Connect to database
            • Load exonsets
            • Write a SAML specification
            • Export a graph as a PDF
            • Write an instance to the table
            • Write to the table
            • Write an instance
            Get all kandi verified functions for this library.

            uta Key Features

            No Key Features are available at this moment for uta.

            uta Examples and Code Snippets

            No Code Snippets are available at this moment for uta.

            Community Discussions

            QUESTION

            Getting rolling average of multiple column by multiple condition, with dplyr and apply family
            Asked 2021-May-08 at 18:35

            I'm performing an analysis on basketball data. This is how my dataset looks like (a really exemplified version of it):

            ...

            ANSWER

            Answered 2021-May-05 at 07:13

            Do you want this? (mean_run from library(runner) used).

            • You can automate this process for as many variables you want. Just use their names in .cols argument of mutate(across...
            • To change rolling window size just change k in mean_run as per choice.

            Source https://stackoverflow.com/questions/67395116

            QUESTION

            mongoimport displaying error: E11000 duplicate key error
            Asked 2021-Feb-26 at 14:47

            I'm doing a tutorial on Flask. I'm trying to add some information from a json file into a MongoDB database

            users.json

            ...

            ANSWER

            Answered 2021-Feb-26 at 14:47

            user_id seems to have an index that forces the field values to be unique

            But in your users.json file, there is no user_id field. So when importing the data it creates the field with a null value for all the users. And since the field, as to be unique you have this error dup key:

            So to fix this, you have to remove the index on the user_id field. The identifier of a document is named _id in mongodb

            Source https://stackoverflow.com/questions/66379042

            QUESTION

            Is there a way to implement elif in list comprehension that also has a for loop in python?
            Asked 2021-Feb-04 at 11:25

            I am looking to implement some list comprehension using both a for loop and an if statement with an elif statement.

            Some background: I am importing data from sports-ref regarding basketball players. I wanted to create a list of all players that average at least 20 points per game this year, but I only want one instance of each player. For example James Harden has averaged more 20 or more points for multiple teams this season, and BBALLREF has a separate entry in his table for each team, and an additional one for the total from both teams. For my purposes I only need the total and am not interested in the data broken down by team. I have implemented list comprehension to compose the list of only 20 point scorers, but not such that it removes multiple instances of the same player and leaves only the total for said player.

            Here is the code that reproduces the appropriate pandas dataframe:

            ...

            ANSWER

            Answered 2021-Feb-03 at 22:56

            If-elif isn't possible in list comprehensions, but chained ternary expressions are:

            Source https://stackoverflow.com/questions/66036891

            QUESTION

            write set to file and format
            Asked 2021-Feb-02 at 17:28

            I have a set that looks like this:

            ...

            ANSWER

            Answered 2021-Feb-02 at 17:02

            kindly use this snippet You have to access the index of the values in the Tuple, the snippet given below produces your desired output

            Source https://stackoverflow.com/questions/66013829

            QUESTION

            How to ensure authors have a unique name
            Asked 2021-Jan-28 at 11:50

            I extracted publication data from Microsoft Academic. Unfortunately, some authors have different versions of their names, e.g.

            names <- data.frame(publication_id = c("1", "2", "3", "4", "5"), author = c("D Smith", "D J Smith", "David Smith", "Enrique Salvador", "E J Salvador"), affiliation = c("UCT", "UCT", "UCT", "UTAS", "UTAS")

            I want authors to have a unique name. Using the above example, I want to get a result that looks like this:

            names <- data.frame(publication_id = c("1", "2", "3", "4", "5"), author = c("D. Smith", "D Smith", "D Smith", "E Salvador", "E Salvador"), affiliation = c("UCT", "UCT", "UCT", "UTAS", "UTAS")

            I am dealing with 1000s of author names so using something like:

            mutate(author = case_when(author == "D.J. Smith" ~ "D. Smith", author == "David Smith" ~ "D.Smith",

            is impractical. I would appreciate any ideas/solutions. Thanks in advance.

            ...

            ANSWER

            Answered 2021-Jan-28 at 11:50

            I think the most likely thing to work would be to take the first letter of the string and the last name and put them together:

            Source https://stackoverflow.com/questions/65936370

            QUESTION

            Getting an error when parsing a JSONObject
            Asked 2021-Jan-14 at 09:28

            I'm trying to get a data from an online JSON, so getting the json and printing it works without issue, but when I want a particular data, my IDE give me this error

            ...

            ANSWER

            Answered 2021-Jan-13 at 18:21

            You are getting an array at the top level instead of a JSON object. You should use JSONArray instead of JSONObject to parse the inital response object.

            Source https://stackoverflow.com/questions/65707591

            QUESTION

            creating dataframe from string of names and other information
            Asked 2021-Jan-12 at 21:09

            Trying to clean up some data and having trouble with the code for this case. The strings look like this:

            string <- 'Inactive: UTA Jarrell Brantley, Juwan Morgan DET Killian Hayes, Derrick Rose '

            I want to make them into a dataframe that looks like this:

            ...

            ANSWER

            Answered 2021-Jan-12 at 21:09

            I'll suggest a tidyverse pipe.

            I'd think the status field is self-evident, so I'll skip that part for now. The rest:

            Source https://stackoverflow.com/questions/65691528

            QUESTION

            Why I getting error while translate query to function
            Asked 2020-Nov-27 at 15:00

            I am trying to create function of existing SELECT query.

            ...

            ANSWER

            Answered 2020-Nov-27 at 15:00

            QUESTION

            Switch-case statement destroys rendered components
            Asked 2020-Nov-15 at 20:34

            I have following problem: I'm using nba-react-logos package and it works fine, until I'm trying to determine, which component should be returned. Here is my component which determine which component from package should be rendered:

            ...

            ANSWER

            Answered 2020-Nov-15 at 14:25

            Your OtherFunctions.pickTeam could be written as a functional component:

            Source https://stackoverflow.com/questions/64843937

            QUESTION

            Vue debounce slider event
            Asked 2020-Oct-22 at 13:55

            I use Vuetify. In a custom component, I have a v-slider that emits an input event which then calls patch method on API.

            The problem is that it sends tons of requests while "sliding". I want to denounce the input to one second.

            Inside component:

            ...

            ANSWER

            Answered 2020-Oct-22 at 13:55

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install uta

            You can download it from GitHub.
            You can use uta like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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            https://github.com/biocommons/uta.git

          • CLI

            gh repo clone biocommons/uta

          • sshUrl

            git@github.com:biocommons/uta.git

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