locus | repository contains the code implementation | Robotics library

by csiro-robotics Python Version: Current License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | locus Summary

locus is a Python library typically used in Automation, Robotics, Deep Learning, Pytorch applications. locus has no bugs, it has no vulnerabilities, it has build file available and it has low support. However locus has a Non-SPDX License. You can download it from GitHub.

This repository is an open-source implementation of the ICRA 2021 paper: Locus: LiDAR-based Place Recognition using Spatiotemporal Higher-Order Pooling.

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Security

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Support

locus has a low active ecosystem.

It has 96 star(s) with 12 fork(s). There are 6 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 4 have been closed. On average issues are closed in 1 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of locus is current.

Quality

locus has 0 bugs and 0 code smells.

Security

locus has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

locus code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

locus has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

locus releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

It has 1778 lines of code, 78 functions and 16 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed locus and discovered the below as its top functions. This is intended to give you an instant insight into locus implemented functionality, and help decide if they suit your requirements.

Load the csv files
Combine multiple sequences
Combine matches with common matches
Normalize the classification data
Extracts segments from a segment
Create a list of cluster indices from a cloud filter
Visualize a point cloud using Open3d
Get the locus of a scene
Calculate softmax features from the database
Extract segments from a scan
Extract segments from a segment
Checks if the given query is visited
Calculate the total time
Compute the transpose of a transformation matrix
Visualize a sequence of features in a 3d
Save a data_variable to a pickle file
Load a pickle file
Returns the next batch
Load time stamps
Performs an augmented scan
Train a scalar model
Align the robot s robot position along the axis
Gets features from segments
Calculate softmax features
Load transforms from a txt file
Return a preprocessor instance
Set time

Get all kandi verified functions for this library.

locus Key Features

No Key Features are available at this moment for locus.

locus Examples and Code Snippets

No Code Snippets are available at this moment for locus.

Community Discussions

Trending Discussions on locus

Tailwind mathjax is showing above to the navbar

Remove unwanted characters from Dataframe values in Pandas

Simply queries in pandas give different results

How do I combine multiple observations in a dataframe to create a list in a column?

Examining position intersect and conditionally drop row based on P-values

RegEx in VSCode: capture every character/letter - not just ASCII

melt dataframe with IDs based on start of column name

Change javascript variable with html button

How to change vertex.shape in R with igraph according to condition

Speeding up a complex python dataframe transposition

QUESTION

Tailwind mathjax is showing above to the navbar

Asked 2022-Feb-14 at 12:33

Sorry to ask a question again as I asked a problem in the morning also.

This time I am facing an issue with Mathjax text. As my navbar is fixed, my texts are going inside the navbar whereas the math expressions are going above the navbar. This is annoying me from today's morning itself.

...

ANSWER

Answered 2022-Feb-14 at 12:33

Insert the tailwind class z-10 to the navbar container to give the navbar a higher z-Index

Source https://stackoverflow.com/questions/71111797

QUESTION

Remove unwanted characters from Dataframe values in Pandas

Asked 2022-Feb-13 at 18:18

I have the following Dataframe full of locus/gen names from a multiple genome alignment.

However, I am trying to get only a full list of the locus/name without the coordinates.

...

ANSWER

Answered 2022-Feb-12 at 17:34

Split by : with a maximum split of two and then take the 2nd elements, eg:

Source https://stackoverflow.com/questions/71094118

QUESTION

Simply queries in pandas give different results

Asked 2022-Feb-08 at 19:06

I am doing simply queries on a csv document about a genome. I have the following code:

...

ANSWER

Answered 2022-Feb-08 at 19:06

You have fallen into one of the classic Python traps. Since 0 is a valid index in a string, the rfind function returns -1 if the string is not found. Both of your if statements will treat that as a win, not a fail. You should use if ...rfind(...) >= 0:.

Is pandas really helping you here? Wouldn't this be easier as a simple list of rows?

Source https://stackoverflow.com/questions/71039471

QUESTION

How do I combine multiple observations in a dataframe to create a list in a column?

Asked 2022-Feb-03 at 14:43

I would like to use the ggupset package to create an upset plot but I am struggling to format my data correctly. My data is currently in a tibble similar to the one below.

...

ANSWER

Answered 2022-Feb-03 at 14:37

Use summarise with list.

Source https://stackoverflow.com/questions/70972804

QUESTION

Examining position intersect and conditionally drop row based on P-values

Asked 2022-Jan-07 at 10:41

I'm working my way through post-analysis of GWAS, where I have defined a list of independent SNPs associated with my trait. I'm trying to group my indep. SNPs in loci of +- 500KB. There are some independent SNP's which locus will overlap each other and I'm trying to write a code that will drop the SNP with the higher P-value, if the two loci overlap.

...

ANSWER

Answered 2022-Jan-06 at 18:47

You can define groups for overlapping sections, then filter for the lowest p-value. E.g.:

Source https://stackoverflow.com/questions/70611605

QUESTION

RegEx in VSCode: capture every character/letter - not just ASCII

Asked 2021-Dec-19 at 22:20

I am working with historical text and I want to reformat it with RegEx. Problem is: There are lots of special characters (that is: letters) in the text that are not matched by RegEx character classes like [a-z] / [A-Z] or \w . For example I want to match the dot (and only the dot) in the following line:

...

ANSWER

Answered 2021-Dec-19 at 22:20

use a negated character class that exculdes the dot and the opening angle bracket:

Source https://stackoverflow.com/questions/70414910

QUESTION

melt dataframe with IDs based on start of column name

Asked 2021-Nov-28 at 19:47

I have a dataset with counts for different genes (Locus) on different days (d0-d24) - dX.2 is the count of the 2nd allele for a given day/locus combination. Right now this dataset is in a sort of "wide" format, with paired columns based on the prefix (dX):

...

ANSWER

Answered 2021-Nov-28 at 19:47

dplyr

Source https://stackoverflow.com/questions/70146612

QUESTION

Change javascript variable with html button

Asked 2021-Nov-10 at 11:01

I am implementing the IGV genome browser in a website. I would like to link a table with chromosome positions to the genome browser, so when a user clicks to one position, the genome browser changes to that position automatically.

By now, I have the genome browser code in a separate javascript file, which uses the value of the button.

...

ANSWER

Answered 2021-Nov-10 at 11:01

You can access the ID and value in a click event:

Source https://stackoverflow.com/questions/69910212

QUESTION

How to change vertex.shape in R with igraph according to condition

Asked 2021-Oct-17 at 18:17

I am trying to change vertex.shape but it doesn't work :

I have a dataframe like :

...

ANSWER

Answered 2021-Oct-17 at 18:17

The way your data are organised in innerJoinDf the values in the Prophage are interpreted as edge attributes. You can see this by looking at your igraph object; where the vertex attributes are indicated by the v and the edge by the e. (You can see the actual attributes using vertex_attr(phage) and edge_attr(phage)).

Source https://stackoverflow.com/questions/69604745

QUESTION

Speeding up a complex python dataframe transposition

Asked 2021-Aug-23 at 19:45

I've got three tables. I need to manipulate table 1 and 2 to get table 3.

Table 1

GENEID person_1 person_2 ENSG001 0.01 1.6 ENSG002 1.25 -2.2

Table 2

ENSG Chromosome EntrezGene GeneSymbol ENSG001 1 001 Symbol1 ENSG002 2 002 Symbol2

Table 3

GENEID GeneSymbol EntrezGene person_id expression ENSG001 Symbol1 001 person_1 0.01 ENSG002 Symbol2 002 person_1 1.25 ENSG001 Symbol1 001 person_2 1.6 ENSG002 Symbol2 002 person_2 -2.2

I've got code that does this. But it is unacceptably slow on large files. I'm dealing with files averaging about 800 columns wide and 60,000 rows deep. I'm not sure how to speed it up.

...

ANSWER

Answered 2021-Aug-23 at 19:45

We can try merge to join df1 and df2 on GENEID then melt to get the data into long form:

Source https://stackoverflow.com/questions/68898150

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install locus

This project has been tested on Ubuntu 18.04 (with Open3D 0.11, tensorflow 1.8.0, pcl 1.8.1 and python-pcl 0.3.0). Set up the requirments as follows:.
Create conda environment with open3d and tensorflow-1.8 with python 3.6:
Set up python-pcl. See utils/setup_python_pcl.txt. For further instructions, see here.
Segment feature extraction uses the pre-trained model from ethz-asl/segmap. Download and copy the relevant content in segmap_data into ~/.segmap/:
Download the KITTI odometry dataset and set the path in config.yml.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: