PopPUNK | PopPUNK ‍ | Genomics library

by johnlees Python Version: 2.4.0 License: Apache-2.0

X-Ray Key Features Code Snippets(1)Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | PopPUNK Summary

PopPUNK is a Python library typically used in Artificial Intelligence, Genomics applications. PopPUNK has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install PopPUNK' or download it from GitHub, PyPI.

See the documentation and the paper.

Support

Quality

Security

License

Reuse

Support

PopPUNK has a low active ecosystem.

It has 38 star(s) with 10 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 10 open issues and 118 have been closed. On average issues are closed in 57 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of PopPUNK is 2.4.0

Quality

PopPUNK has 0 bugs and 0 code smells.

Security

PopPUNK has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

PopPUNK code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

PopPUNK is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

PopPUNK releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

PopPUNK saves you 1625 person hours of effort in developing the same functionality from scratch.

It has 6237 lines of code, 183 functions and 45 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed PopPUNK and discovered the below as its top functions. This is intended to give you an instant insight into PopPUNK implemented functionality, and help decide if they suit your requirements.

Generate visualisations .
Parse PopPUNK .
Assign a query .
Performs refine fit .
Extract references from graph G .
Print the cluster clusters of the given query sequences .
Function to add queries to the network .
Writes cluster data to a csv file .
Run QC sketchlib .
Queries the given database using the given parameters .

Get all kandi verified functions for this library.

PopPUNK Key Features

No Key Features are available at this moment for PopPUNK.

PopPUNK Examples and Code Snippets

POPulation Partitioning Using Nucleotide Kmers ,Installation,Through conda (recommended)

Python

Lines of Code : 4

License : Permissive (Apache-2.0)

Copy

conda install poppunk

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

Community Discussions

Trending Discussions on PopPUNK

Cannot findword in each line python

QUESTION

Cannot findword in each line python

Asked 2018-Apr-19 at 06:30

My text file is something like this.

...

ANSWER

Answered 2018-Apr-19 at 02:03

I feel you making it more complicated than it should be

What if you do like this ?

Source https://stackoverflow.com/questions/49911255

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install PopPUNK

This is for the command line version. For more details see installation in the documentation.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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