zoo | portable datastructure for rapid prototyping | Genomics library

 by   phiweger Python Version: v0.2 License: No License

kandi X-RAY | zoo Summary

kandi X-RAY | zoo Summary

zoo is a Python library typically used in Healthcare, Healthcare Providers, Artificial Intelligence, Genomics applications. zoo has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

A portable datastructure for rapid prototyping in (viral) bioinformatics (under development). Instead of designing a database, we try to grow one.
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              zoo has a low active ecosystem.
              It has 5 star(s) with 2 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 105 open issues and 35 have been closed. On average issues are closed in 17 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of zoo is v0.2

            kandi-Quality Quality

              zoo has no bugs reported.

            kandi-Security Security

              zoo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              zoo does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              zoo releases are available to install and integrate.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed zoo and discovered the below as its top functions. This is intended to give you an instant insight into zoo implemented functionality, and help decide if they suit your requirements.
            • Load Entrez data from NCBI
            • Set a value in a nested dict
            • Convert Accessions to format
            • Generate a batch of accessions
            • Processes a batch of accessions
            • Commit data to a JSON file
            • Return an iterable of items
            • Return a flattened version of a list
            • Hashes a list of values
            • Imports derivative_MSA
            • Convert a sequence of gaps into a dictionary
            • Parse a tree
            • Encode gaps in seqs
            • Generate a list of minhash signatures
            • Execute the diff command
            • Parse a date string into a dictionary
            • Subset a subset of msa
            • Compute minhash signatures for selected documents
            • Parse a DNA virus
            • Convert accessions to GB files
            • Convenience function to perform minhash calculation
            • Minhash search
            • Add documents to a cell
            • Index documents
            • Pull entries from a JSON dump
            • Helper function for deep_set
            • Dump query to a file
            • Iterate over a query
            Get all kandi verified functions for this library.

            zoo Key Features

            No Key Features are available at this moment for zoo.

            zoo Examples and Code Snippets

            No Code Snippets are available at this moment for zoo.

            Community Discussions

            QUESTION

            error using lapply on tibble convert from double to logical
            Asked 2021-Jun-14 at 16:50

            Edit: It looks like this is a known issue with the "cascade" method. Results that return NA values after the first attempt don't like being converted to doubles when subsequent methods return lat/lons.

            Data: I have a list of addresses that I need to geocode. I'm using lapply() to split-apply-combine, which works, but very slowly. My thought to split (further)-apply-combine is returning errors about dim names and sizes that are confusing to me.

            ...

            ANSWER

            Answered 2021-Jun-14 at 15:59

            It is working with dplyr 1.0.6

            Source https://stackoverflow.com/questions/67973344

            QUESTION

            How to write trycatch for this scenario in R
            Asked 2021-Jun-12 at 07:58

            Currently I have written the ifelse statement to get the correct symbol pattern. But I want to know how I can write tryCatch for this statement? Because sometimes getSymbols returns error if symbol doesn't have correct extension.

            ...

            ANSWER

            Answered 2021-Jun-12 at 07:58

            Have you tried wrapping the complete code inside tryCatch ?

            Source https://stackoverflow.com/questions/67946762

            QUESTION

            Conditionally Rollmean based on another column value
            Asked 2021-Jun-12 at 01:10

            I'm trying to take the moving average of a players fantasy points, based on their past performance against the same hand pitcher, over the past 3 games.

            ...

            ANSWER

            Answered 2021-Jun-12 at 01:08

            Include pitcher_hand in group_by -

            Source https://stackoverflow.com/questions/67938589

            QUESTION

            How do I combine data from a Pandas DataFrame with a multiindex into a list
            Asked 2021-Jun-11 at 22:23

            I have a Pandas dataframe with a multiindex, the result of a pivot (as in the pivot pandas function description)

            ...

            ANSWER

            Answered 2021-Jun-11 at 22:23

            One option is to combine columns baz and zoo first and then pivot the table:

            Source https://stackoverflow.com/questions/67944013

            QUESTION

            Evaluate simple RNN in Julia Flux
            Asked 2021-Jun-11 at 12:27

            I'm trying to learn Recurrent Neural Networks (RNN) with Flux.jl in Julia by following along some tutorials, like Char RNN from the FluxML/model-zoo.

            I managed to build and train a model containing some RNN cells, but am failing to evaluate the model after training.

            Can someone point out what I'm missing for this code to evaluate a simple (untrained) RNN?

            ...

            ANSWER

            Answered 2021-Jun-11 at 12:27

            Turns out it's just a problem with the input type.

            Doing something like this will work:

            Source https://stackoverflow.com/questions/67934386

            QUESTION

            R: monthly expanding regression using daily data
            Asked 2021-Jun-10 at 17:08

            I want to perform an expanding regression at monthly frequency using daily data. The model is:

            ...

            ANSWER

            Answered 2021-Jun-10 at 17:08

            Create a function coef2 that given a yearmon object computes the second regression coeffient up to dates in that year and month.

            Source https://stackoverflow.com/questions/67924957

            QUESTION

            How can I show Q1 to quarter without year on r
            Asked 2021-Jun-05 at 03:14

            I am studying R and the exercise needs that I create a column to Quarter where the data seem Q4.

            I use zoo library and lubridate, but the result that I achieved was a year plus Q1.

            I have a column InvoiceDate where I it has a complete datetime.

            What I need:

            The original table, more specifically column, has a date-time like this: 2010-12-01 08:26:00. The column name is InvoiceDate. I need to get this column and to create other columns with specific values, like a quarter, year, month, etc.

            What I archieved:

            How do I achieve my goal?

            ...

            ANSWER

            Answered 2021-Jun-05 at 02:41

            You can use the inbuilt functions to extract the information that you need.

            Source https://stackoverflow.com/questions/67845733

            QUESTION

            R- Calculate rolling mean from values match a column across multiple columns
            Asked 2021-Jun-04 at 12:55

            Test Data

            ...

            ANSWER

            Answered 2021-Jun-04 at 12:55

            My understanding is that the question is asking that for each row find the earlier rows having that row's winner as either a winner or loser. Then from those rows take wpointp for those rows for which it is a winner and lpointp for those rows for which it is a loser and average all those numbers.

            1) sqldf We first make wpointp and lpointp numeric and then left join the result to itself using the indicated on condition and produce the average shown using avg.

            Source https://stackoverflow.com/questions/67776135

            QUESTION

            How to map lists without overwriting values
            Asked 2021-Jun-04 at 11:24

            I have an object which contains two different object types, I am trying to map it to another object which will contain a single list.

            In this simple minimal reproducible example I have created a zoo class which contains a list of animals this is the destination. The source is the MammelHouse class which contains lists of pig and cow objects.

            My issue is when I try to add the pigs to the list then it over writes the already written cows. I need both objects to be added to this list.

            My current solution is to map each object type alone and then add them to the main object, as my actual application has ten different types currently this is not an optimal solution. I am hoping that there is a way to solve this with automapper directly.

            current mapping attempt ...

            ANSWER

            Answered 2021-Jun-04 at 11:24

            Add a common interface IMammel to Cowand Pig and then use Concat

            Model

            Source https://stackoverflow.com/questions/67833797

            QUESTION

            How to change the (number of) x-axis ticks in a plot.zoo plot? (axis() fails)
            Asked 2021-Jun-03 at 12:52

            The following time series plot with plot.zoo() shows a weird number of (only one) x-axis ticks. How can one convince plot.zoo() to show more x-axis ticks?

            ...

            ANSWER

            Answered 2021-Jun-03 at 07:17

            Here is a version based on standard plot():

            Source https://stackoverflow.com/questions/67816173

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install zoo

            Diffpatch of JSON objects is implemented in node. To install the required dependencies (assuming you have node and npm installed, e.g. with brew on the Mac.).

            Support

            zoo provides a command-line tool as well as a Python library. For detailed information about zoo's intention, implementation, use cases and tutorials refer to the wiki. Documentation about zoo's functions and API is available at readthedocs.
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            CLONE
          • HTTPS

            https://github.com/phiweger/zoo.git

          • CLI

            gh repo clone phiweger/zoo

          • sshUrl

            git@github.com:phiweger/zoo.git

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