zoo | portable datastructure for rapid prototyping | Genomics library
kandi X-RAY | zoo Summary
kandi X-RAY | zoo Summary
A portable datastructure for rapid prototyping in (viral) bioinformatics (under development). Instead of designing a database, we try to grow one.
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Top functions reviewed by kandi - BETA
- Load Entrez data from NCBI
- Set a value in a nested dict
- Convert Accessions to format
- Generate a batch of accessions
- Processes a batch of accessions
- Commit data to a JSON file
- Return an iterable of items
- Return a flattened version of a list
- Hashes a list of values
- Imports derivative_MSA
- Convert a sequence of gaps into a dictionary
- Parse a tree
- Encode gaps in seqs
- Generate a list of minhash signatures
- Execute the diff command
- Parse a date string into a dictionary
- Subset a subset of msa
- Compute minhash signatures for selected documents
- Parse a DNA virus
- Convert accessions to GB files
- Convenience function to perform minhash calculation
- Minhash search
- Add documents to a cell
- Index documents
- Pull entries from a JSON dump
- Helper function for deep_set
- Dump query to a file
- Iterate over a query
zoo Key Features
zoo Examples and Code Snippets
Community Discussions
Trending Discussions on zoo
QUESTION
Edit: It looks like this is a known issue with the "cascade" method. Results that return NA values after the first attempt don't like being converted to doubles when subsequent methods return lat/lons.
Data: I have a list of addresses that I need to geocode. I'm using lapply()
to split-apply-combine, which works, but very slowly. My thought to split (further)-apply-combine is returning errors about dim names and sizes that are confusing to me.
ANSWER
Answered 2021-Jun-14 at 15:59It is working with dplyr
1.0.6
QUESTION
Currently I have written the ifelse statement to get the correct symbol pattern. But I want to know how I can write tryCatch for this statement? Because sometimes getSymbols returns error if symbol doesn't have correct extension.
...ANSWER
Answered 2021-Jun-12 at 07:58Have you tried wrapping the complete code inside tryCatch
?
QUESTION
I'm trying to take the moving average of a players fantasy points, based on their past performance against the same hand pitcher, over the past 3 games.
...ANSWER
Answered 2021-Jun-12 at 01:08Include pitcher_hand
in group_by
-
QUESTION
I have a Pandas dataframe with a multiindex, the result of a pivot (as in the pivot pandas function description)
...ANSWER
Answered 2021-Jun-11 at 22:23One option is to combine columns baz
and zoo
first and then pivot the table:
QUESTION
I'm trying to learn Recurrent Neural Networks (RNN) with Flux.jl in Julia by following along some tutorials, like Char RNN from the FluxML/model-zoo.
I managed to build and train a model containing some RNN cells, but am failing to evaluate the model after training.
Can someone point out what I'm missing for this code to evaluate a simple (untrained) RNN?
...ANSWER
Answered 2021-Jun-11 at 12:27Turns out it's just a problem with the input type.
Doing something like this will work:
QUESTION
I want to perform an expanding regression at monthly frequency using daily data. The model is:
...ANSWER
Answered 2021-Jun-10 at 17:08Create a function coef2 that given a yearmon object computes the second regression coeffient up to dates in that year and month.
QUESTION
I am studying R and the exercise needs that I create a column to Quarter where the data seem Q4.
I use zoo library and lubridate, but the result that I achieved was a year plus Q1.
I have a column InvoiceDate where I it has a complete datetime.
What I need:
The original table, more specifically column, has a date-time like this: 2010-12-01 08:26:00. The column name is InvoiceDate. I need to get this column and to create other columns with specific values, like a quarter, year, month, etc.
What I archieved:
How do I achieve my goal?
...ANSWER
Answered 2021-Jun-05 at 02:41You can use the inbuilt functions to extract the information that you need.
QUESTION
Test Data
...ANSWER
Answered 2021-Jun-04 at 12:55My understanding is that the question is asking that for each row find the earlier rows having that row's winner as either a winner or loser. Then from those rows take wpointp for those rows for which it is a winner and lpointp for those rows for which it is a loser and average all those numbers.
1) sqldf We first make wpointp and lpointp numeric and then left join the result to itself using the indicated on
condition and produce the average shown using avg
.
QUESTION
I have an object which contains two different object types, I am trying to map it to another object which will contain a single list.
In this simple minimal reproducible example I have created a zoo class which contains a list of animals this is the destination. The source is the MammelHouse class which contains lists of pig and cow objects.
My issue is when I try to add the pigs to the list then it over writes the already written cows. I need both objects to be added to this list.
My current solution is to map each object type alone and then add them to the main object, as my actual application has ten different types currently this is not an optimal solution. I am hoping that there is a way to solve this with automapper directly.
current mapping attempt ...ANSWER
Answered 2021-Jun-04 at 11:24Add a common interface
IMammel
to Cow
and Pig
and then use Concat
Model
QUESTION
The following time series plot with plot.zoo()
shows a weird number of (only one) x-axis ticks. How can one convince plot.zoo()
to show more x-axis ticks?
ANSWER
Answered 2021-Jun-03 at 07:17Here is a version based on standard plot()
:
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