iva | de novo virus assembler of Illumina paired reads | Genomics library
kandi X-RAY | iva Summary
kandi X-RAY | iva Summary
IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high and variable depth. For more information, please read the IVA publication.
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Run gage
- Copy directory to outdir
- Copy a directory
- Copies the zip_dir to outdir
- Find bad bases in bam
- Calculate the consensus base
- Find the consensus base based on counts
- Append a kmer to the list
- Determine the type of pair between sam1 and sam2
- Returns the softclipped flag
- Return whether sam can extend sam
- Convert BAM file to FASTA pairs
- Convert SAM to a FASTA sequence
- Calculate the most common kmers
- Print the head of two reads
- Extend the sequence
- Convert bam to FASTA file
- Convert a BAM file into a FASTA file
- Extend the sequences with the left and right
- Trim primers and pads and adapter sequences
- Write command line arguments to file
- Subsample a BAM file
- Run Ratt
- Build the virus database
- Run the simulation
- Extend the end of the list
iva Key Features
iva Examples and Code Snippets
Lines of Code : 129License : Strong Copyleft (GPL-3.0)
Copyusage: iva [options] {-f reads_fwd -r reads_rev | --fr reads}
positional arguments:
Output directory Name of output directory (must not already exist)
optional arguments:
-h, --help show this help message and exit
Input and ou {% for key, value in entrata.corrispettivi.items %}
IVA {{key}} %
{{value.totale}}
{{value.imposta}}
{{value.imponibile}}
{% endfor %}
original_list = [1, 2, 3]
reference_list = original_list
old_list = original_list.copy()
print(original_list)
original_list.append(4)
print(reference_list)
print(old_list) # this is what you are looking for
s = 'Iva paper 10,Nelson pens 5,Oleg marker 3,Sasha paper 7,Mark envelope 20'
g = dict((j, dict([(k, l)])) for i in s.split(',') for j, k, l in (i.split(' '),))
#{'Iva': {'paper': '10'}, 'Nelson': {'pens': '5'}, 'Oleg': {'marker': '3'}, pip install tkmacosx --upgrade
pip install tkmacosx==0.1.3
iva_a_debito['Iva a debito'] = list(accumulate(diff))
try:
#query to get objects
except yourmodel.DoesNotExist:
#set_variable=0
l = [1,2,3,4,5]
s = [*map(sum, zip(l, [0]+l))]
print(s)
[1, 3, 5, 7, 9]
list1 = Iva_total.get('Iva a debito')
list2 = Ricavi_total.get('Ricavi')
list_diff = [num2-num1 for (num1, num2) in zip(list1, list2)]
Difference = {}
Difference['Difference'] = list_diff
print(Difference) # You will get what yclass CurrentAliquoteIVAView(generics.ListAPIView):
permission_classes = [permissions.IsAuthenticatedOrReadOnly]
filter_backends = [filters.SearchFilter]
search_fields = ['descrizione']
serializer_class = AliquoteIVASerialiCommunity Discussions
Trending Discussions on iva
QUESTION
I have an unbound datagridview, set the option to allow user to add row to True, and all I want is that once I "complete" a row, the datagridview automatically should create a new empty row, so I set the method
...ANSWER
Answered 2022-Mar-25 at 14:32Is there some reason you do not use a DataSource for the grid? Then you could simply add the row to the DataSource.
If you insist on manually adding the rows, then the problem you currently have is that the code is never “adding” a new row to the grid. The code simply uses the grids CurrentRow to set the values. This may work but the grids “new” row will not get created.
It is questionable to use the grids CurrentRow in this manner... So instead of using the grids CurrentRow for this, I suggest you “add” a new row in the RicercaxCodiceArticolo method. Something like below should add the new row and the “new-new” empty row should be at the bottom…
QUESTION
in my invoicing software I have the "master" datagridview which I integrated with a lookup feature: once user presses F3 while on the Code field, it shows a modal form with another datagridview that shows a list of products to choose from.
Where i'm stuck is where user clicks Ok on the selected products, because I don't know well how to fill the Datagridview correctly in order to have all on the same row. Here's my code:
...ANSWER
Answered 2022-Mar-14 at 22:58Well … I will assume a couple of things that you are neglecting to tell us.
We must assume that the first grid does NOT use a
DataSourceand the columns are added in the designer or in some code you are not showing. This assumption is based on the code that adds the rows directly to the grid since you can not add rows directly to the grid when it is data bound.Also, I will assume that the line of code …
source.DataSource = cmd.ExecuteReader… is returning a
DataTablefrom the SQL commandcmd.
If both my assumptions are correct, then in my small tests, the line of code…
QUESTION
I'm building a Woocommerce store and I need to get all the prices with tax included to end in zero (For example, if the original price with tax included is 1234, then I round it to 1240).
Products are imported to my website in bulk (+2800 products) but they have the price without tax. I configured the tax in woocommerce settings and I display prices with tax included in the store.
To fix the "ending in 0" problem, I created a method to change the tax value so the final price ends in 0:
...ANSWER
Answered 2022-Mar-09 at 19:56I finally got a solution, first I created a method to calculate the prices without tax:
QUESTION
I state that I have never used Scrapy (and therefore I do not even know if it is the right tool).
On the website https://www.ufficiocamerale.it/, I am interested in entering an 11-digit numeric code (for example 06655971007) in the bar "INSERISCI LA PARTITA IVA/RAGIONE SOCIALE" and then click on "CERCA". Then I would like to save the resulting HTML in a variable that I would later analyze with BeautifulSoup (I shouldn't have any problems with that). So, how can I do the first part?
I imagine something like:
...ANSWER
Answered 2022-Feb-25 at 12:51It uses JavaScript to generate some elements so it would be simpler to use Selenium
QUESTION
I need to get the value of totale in this dictionary dynamically:
...ANSWER
Answered 2021-Dec-28 at 18:42Try this:
QUESTION
I am trying to format from EURO to Latin American countries. But I can't get all of them to format correctly.
These two lines work fine:
...ANSWER
Answered 2021-Dec-25 at 15:37As added background information based on my earlier comments, in case you were having trouble separating all the inter-related concerns, and putting all the pieces together, (i don't know if you are or not); Here is some code i've used in the past solving a similar issue. I've adjusted it based on your datamodel/code and added some comments:
Personally, since keeping half the currency information in the database and the other half in code seems messy, i would add 4 columns to your monedas database table; namely (in the case of 'Ecuador' for example):
QUESTION
I have two data frames which I want to process with a for loop. Their structures are the following:
...ANSWER
Answered 2021-Dec-01 at 18:22The issue seems to be assigning the column names df[paste0("lag", 1:3)] i.e. when we do the lag on the whole data or a part of it df[,2:ncol(df)], the assignment to the lhs of = is not of the same length i.e. it is just of length 3 compared to the original ncol(df)-1. As we are using a for loop, the inner lag can also be in a for loop
QUESTION
I have a series of data frames, each representing a linear model. I want to automatically remove columns from each data frame based on a threshold of 10 for the VIF criteria. A given data frame looks like this:
...ANSWER
Answered 2021-Nov-30 at 19:09The problem is that you have non-standard names in your data.frame (some of the columns contain spaces). This causes a problem because the names of the object returned by vif() do not exactly match the column name any more. The vif function wraps the non-standard column names in backticks but those backticks are not actually part of the column name in the data.frame. You can remove those ticks when doing the match, for example:
QUESTION
I have a dataframe with two column: PathGroupStage, ClinGroupStage. I want to create a new column, OutputStage, that chooses the higher stage.
Valid value of stage: I, IA, IB, II, IIA, IIB, III, IIIA, IIIB, IIIC ,IV, IVA, IVB, IVC, Unknown.
- If both stages have values, then use the highest, e.g., IIIB > IIIA > III
- If one is missing and the other has value, the use the one with value
- If both are missing or unknown, then .= unknown
How would I derive the OutputStage variable comparing the non-numeric values from the two columns? I am thinking I need to factor levels but how would I compare the factors between different columns?
Here is the sample dataset:
...ANSWER
Answered 2021-Nov-24 at 16:02One option could be:
QUESTION
I have one list Client list (agGrid) is used. on click, it navigates to editClient form aka childComponent. How can I pass the whole object from that client list component to edit client from the component? Please let me know the best way to do..
below is the object I want to pass
...ANSWER
Answered 2021-Oct-23 at 12:18I suggest you to achieve that this way:
- Create a service. (
ng g s) - Put your variables in that service so you can reference them in both pages.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install iva
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page
