ngs-tools | Miscellaneous tools for genomics | Genomics library

by timoast Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(5)Vulnerabilities Install Support

kandi X-RAY | ngs-tools Summary

ngs-tools is a Python library typically used in Artificial Intelligence, Genomics applications. ngs-tools has no bugs, it has no vulnerabilities and it has low support. However ngs-tools build file is not available. You can download it from GitHub.

Miscellaneous tools for genomics

Support

Quality

Security

License

Reuse

Support

ngs-tools has a low active ecosystem.

It has 6 star(s) with 1 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

ngs-tools has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of ngs-tools is current.

Quality

ngs-tools has no bugs reported.

Security

ngs-tools has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

ngs-tools does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

ngs-tools releases are not available. You will need to build from source code and install.

ngs-tools has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed ngs-tools and discovered the below as its top functions. This is intended to give you an instant insight into ngs-tools implemented functionality, and help decide if they suit your requirements.

Replace reference sequences in a genome
Produce a string from a dictionary
Sort a list
Corrects the SNP sequence at a given position
Count the number of reads in a BAM file
Update the read data
Return random coordinates for nreads
Scan the list of tags
Sum the TPK for a given column
Sum the FKM
Extract reads
Return a list of names
Extract data from a file
Remove outliers from data
Plot MCCM data
Find the methylation
Saves the ChgData object
Calculate the mean and standard deviation

Get all kandi verified functions for this library.

ngs-tools Key Features

No Key Features are available at this moment for ngs-tools.

ngs-tools Examples and Code Snippets

No Code Snippets are available at this moment for ngs-tools.

Community Discussions

Trending Discussions on ngs-tools

IntelliJ IDEA keeps trying to Auto fetch a deleted repository

Make 'Google' the default docstring style for ALL projects PyCharm

Go to current Project Directory in Terminal

Intellij Idea - ignoring non-zero exit code of external tool

PyCharm Windows: how to modify the shell PATH of the command line?

QUESTION

IntelliJ IDEA keeps trying to Auto fetch a deleted repository

Asked 2020-Jul-24 at 06:02

I deleted some repository from GitHub. and IntelliJ IDEA keeps trying to Auto fetch them. I'm constantly I get this error message:

9:06 PM Auto fetch failed origin: remote: Repository not found. Authentication failed for 'https://github.com/Guilderm/skypos.git/' Development: remote: Repository not found. Authentication failed for 'https://github.com/Guilderm/Skypos.git/' master and Dev: remote: Repository not found. Authentication failed for 'https://github.com/Guilderm/Skopos.git/' github: remote: Repository not found. Authentication failed for 'https://github.com/Guilderm/Sypos.git/'

each time this happens, I get a pop asking me for a password and have to enter it 3 to 4 times, despite having the remember password check

I have created a new project and looked at Settings Repository: https://www.jetbrains.com/help/idea/settings-tools-settings-repository.html

...

ANSWER

Answered 2020-Jul-24 at 04:10

git remote rm origin

This command will delete the local reference to the remote repository. Intellij should be smart enough to pick up on that and stop fetching.

If that doesn't work, try going to the menu option listed here: How to change GitHub repository in IDEA Intellij?

Source https://stackoverflow.com/questions/63066256

QUESTION

Make 'Google' the default docstring style for ALL projects PyCharm

Asked 2019-Oct-03 at 12:33

I'm aware that I can go to Settings | Tools | Python Integrated Tools | Docstrings | Docstring format | Google, but this only sets the the docstring format for the current project (as indicated by the heading 'for current project' in the window). I'm looking for a way to change the default, so that all of my projects utilize the google docstring format by default.

JetBrain's own documentation makes no mention of how to accomplish this as far as I can tell.

...

ANSWER

Answered 2019-Oct-03 at 12:33

This isn't possible to do at the moment. Please submit a feature request about it to https://youtrack.jetbrains.com/issues/PY

EDIT: The following ticket (mentioned below) is now in In Progress status https://youtrack.jetbrains.com/issue/PY-20243. According to Fix versions field, it should be implemented in 2019.3 version.

Source https://stackoverflow.com/questions/54370403

QUESTION

Go to current Project Directory in Terminal

Asked 2018-Jul-06 at 13:18

I configured Settings > Tools > Terminal according to the Terminal Docs for cmder and it's working so far. But for some Reason, start directory does not seem to work. I always end up in my userhome when starting a new terminal. How can I fix this?

Windows 10 Pro 1803, build 17134.137
ConEmu-Maximus5 171109
PhpStorm 2018.1.6

...

ANSWER

Answered 2018-Jul-06 at 13:02

Looks like either cmd.exe or Cmder is set up so that it's working directory gets changed to %USERPROFILE% once console is opened. Does the issue persist if you change Shell path to just cmd.exe? If yes, you must have configured the shell to cd to a specific folder once it starts (see https://www.winhelponline.com/xp/autoruncmd.htm). Otherwise it should be a Cmder configuration that is responsible for changing a folder to your user home. Check your configs for presence of :d:%USERPROFILE% or similar

Source https://stackoverflow.com/questions/51210542

QUESTION

Intellij Idea - ignoring non-zero exit code of external tool

Asked 2018-May-23 at 17:43

I'm using external tool to run fuser -k 1099 command before actually launching my run configuration But if external tool returns non-zero status, build configuration stops. That is perfectly correct, but I can not find any way to ignore failure. If it was a plain bash, I'd do something like fuser -k 1099 || true. But at Idea, that seems to be not possible

Any ideas?

...

ANSWER

Answered 2018-May-23 at 17:43

You can use /bin/bash as the program and the following as the arguments:

Source https://stackoverflow.com/questions/50469130

QUESTION

PyCharm Windows: how to modify the shell PATH of the command line?

Asked 2018-Apr-17 at 08:06

In the Settings > Tools > Terminal menu, you can read here that you can change the Shell path and there are example of how to add parameters.

I want to be able to launch the default "cmd.exe" with the option that changes the PATH like this:

...

ANSWER

Answered 2018-Apr-17 at 08:06

Try one of those (works for me):

Source https://stackoverflow.com/questions/49872537

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ngs-tools

Download data from NCBI SRA or ENA.
Download data from NCBI GEO.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: