ballgown | Bioconductor package `` ballgown `` , devel version | Genomics library

by alyssafrazee R Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | ballgown Summary

ballgown is a R library typically used in Artificial Intelligence, Genomics applications. ballgown has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Ballgown is a software package designed to facilitate flexible differential expression analysis of RNA-Seq data. It also provides functions to organize, visualize, and analyze the expression measurements for your transcriptome assembly.

Support

Quality

Security

License

Reuse

Support

ballgown has a low active ecosystem.

It has 138 star(s) with 60 fork(s). There are 26 watchers for this library.

It had no major release in the last 6 months.

There are 58 open issues and 117 have been closed. On average issues are closed in 70 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of ballgown is current.

Quality

ballgown has 0 bugs and 0 code smells.

Security

ballgown has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ballgown code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ballgown does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

ballgown releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

It has 1044 lines of code, 0 functions and 2 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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ballgown Key Features

No Key Features are available at this moment for ballgown.

ballgown Examples and Code Snippets

No Code Snippets are available at this moment for ballgown.

Community Discussions

Trending Discussions on ballgown

Combining terms with synonyms - ElasticSearch

Can you help me to resolve the error I am getting after running Stringtie prepDE.py?

Regex match subheading titles only

QUESTION

Combining terms with synonyms - ElasticSearch

Asked 2022-Apr-08 at 11:21

I am new to Elasticsearch and have a synonym analyzer in place which looks like-

...

ANSWER

Answered 2022-Apr-08 at 11:21

You can configured index time analyzer insted of search time analyzer like below:

Source https://stackoverflow.com/questions/71794754

QUESTION

Can you help me to resolve the error I am getting after running Stringtie prepDE.py?

Asked 2020-Oct-27 at 15:19

When I run prepDE.py job exit with the following error. I am using StringTie/2.1.4 with Python/2.7.18. Following is the command I was running (inside ADA cluster)

...

ANSWER

Answered 2020-Oct-27 at 15:19

This is an educated guess based on the error and the documentation linked:

-i INPUT, --input=INPUT, --in=INPUT
– a folder containing all sample sub-directories, or a text file with sample ID and path to its GTF file on each line [default: . ]

Try invoking the script with

Source https://stackoverflow.com/questions/64557330

QUESTION

Regex match subheading titles only

Asked 2020-Jun-03 at 12:38

I have a dataframe with a column with titles (see example below)

...

ANSWER

Answered 2020-Jun-03 at 12:35

You may use

Source https://stackoverflow.com/questions/62170551

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ballgown

Start R and run:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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