SHARP | cell RNA-seq Hyper-fast and Accurate processing | Genomics library

by shibiaowan R Version: 1.1.0 License: Non-SPDX

X-Ray Key Features Code Snippets(3)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | SHARP Summary

SHARP is a R library typically used in Artificial Intelligence, Genomics applications. SHARP has no bugs, it has no vulnerabilities and it has low support. However SHARP has a Non-SPDX License. You can download it from GitHub.

Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection.

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Quality

Security

License

Reuse

Support

SHARP has a low active ecosystem.

It has 13 star(s) with 4 fork(s). There are 1 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 1 have been closed. On average issues are closed in 18 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of SHARP is 1.1.0

Quality

SHARP has no bugs reported.

Security

SHARP has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

SHARP has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

SHARP releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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SHARP Key Features

No Key Features are available at this moment for SHARP.

SHARP Examples and Code Snippets

Quick Start:

Lines of Code : 18

License : Non-SPDX (NOASSERTION)

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library(SHARP)

scExp = scExp_tpm #a TPM-based single-cell pancreas data from Wang et al.
dim(scExp) #check the numbers of genes and cells

scExp[1:5,1:5] #check typical values of the expression matrix

res = SHARP(scExp)

#the last several lines sho

More Details:,Number of Clusters:

Lines of Code : 9

License : Non-SPDX (NOASSERTION)

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res = SHARP(scExp, N.cluster = 8) # predefine the final cluster number is 8

res = SHARP(scExp, minN.cluster = 8) # let SHARP find the optimal cluster number from the minimum 8 and a maximum number determined by SHARP

res = SHARP(scExp, maxN.cluster

Processing 1.3 Million Single Cells:

Lines of Code : 7

License : Non-SPDX (NOASSERTION)

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res = SHARP_unlimited(scExp) # dealing with 1.3 million single cells which are saved as a list of 26 matrices

ndinfo = list()#three elements: the directory of those files to save the 1.3 million single cells, number of cells and number of genes
ndin

Community Discussions

Trending Discussions on SHARP

Plotly graph title and labels are off white color

How can I await until I receive a callback/notification without busy-waiting?

AES_GCM in .net with streams

How to append an element to a C# array for JSON reasons?

How to use Node Sharp package

Issues with Sharp in Azure functions

How to properly render images using a map function with Gatsby.js

How do you test if an attribute exists in a dynamic JSON file

Failed to deploy Cloud Functions after upgrading to node 14

C# Make one expression tree into two (or two new expression trees with divided logic)

QUESTION

Plotly graph title and labels are off white color

Asked 2021-Jun-15 at 06:28

I have generated the below plotly graph using the code as below :

...

ANSWER

Answered 2021-Jun-15 at 06:28

There are several themes you can try out. If you use 'solar', you will get the color you want. The source of the theme can be found here for your reference.

Source https://stackoverflow.com/questions/67980812

QUESTION

How can I await until I receive a callback/notification without busy-waiting?

Asked 2021-Jun-14 at 06:22

I understand how I can await on library code to wait for a network request or other long-running action to complete, but how can I await on my own long-running action without busy waiting?

This is the busy-waiting solution. How can I make it event-driven?

...

ANSWER

Answered 2021-May-19 at 22:46

Generally in concurrency a "future" is placeholder for a return value and it has an associated "promise" that is fulfilled to pass the final return value.

In C#, they have different names: the future is a Task and the promise is a TaskCompletionSource.

You can create a promise, await on it, and then fulfill it when you get your callback:

Source https://stackoverflow.com/questions/67611867

QUESTION

AES_GCM in .net with streams

Asked 2021-Jun-11 at 18:11

In my previous question (RAM not being freed in c# after working with files) I asked about a way to clear RAM. someone suggested using streams instead of reading it into a variable. I found Encrypting/Decrypting large files (.NET) which uses streams but it is not using AesGcm. The problem is that I can't find how to use AesGcm with streams. AesGcm.decrypt only accepts Byte[] in the ciphertext field, and AesManaged doesn't have CihperMode.GCM.

Currently, decryption takes 4GB of ram when decrypting an 800MB file. How can I decrypt a file with AesGcm without filling the RAM?

Thanks.

...

ANSWER

Answered 2021-Feb-01 at 14:24

I'll say that AesGcm (and probably AesCcm) in .NET don't support "streaming" mode and it seems the consensus (https://crypto.stackexchange.com/questions/51537/delayed-tag-checks-in-aes-gcm-for-streaming-data) is that you shouldn't create a streaming mode AesGcm. I'll add another reference about this https://github.com/dotnet/runtime/issues/27348 . I'm not an expert in cryptography so it isn't clear for me what are the problems about streaming an encrypted document and checking for its authentication tags only at the end.

If possible you should change the algorithm. Otherwise other solutions can be found. The Bouncycastle library supports AesGcm.

Source https://stackoverflow.com/questions/65991075

QUESTION

How to append an element to a C# array for JSON reasons?

Asked 2021-Jun-11 at 10:25

I'm still working on my JSON parser and writer.

Using Visual Studio Web Essentials, I have created a class diagram, which contains some arrays where I can put information, like this one:

...

ANSWER

Answered 2021-Jun-11 at 10:25

You can't resize fixed size array. The array is always has a fixed size

The best solution here is to use List instead of Channel[].

Otherwise you can create a new array with the size of the previous plus one and set adding value by the last array index, but my opinion that it would be dirty.

Here are msdn docs about arrays: Array Here is what the say

Unlike the classes in the System.Collections namespaces, Array has a fixed capacity. To increase the capacity, you must create a new Array object with the required capacity, copy the elements from the old Array object to the new one, and delete the old Array.

Source https://stackoverflow.com/questions/67934467

QUESTION

How to use Node Sharp package

Asked 2021-Jun-10 at 14:03

I am actually trying to resize image using sharp package. For Reference: https://www.npmjs.com/package/sharp

I am getting image data from frontend (which is in react) to Backend (Which is in node) as below

...

ANSWER

Answered 2021-Jun-10 at 11:55

What you need is data in your imageData from the frontend and use resize function in sharp module.

Here's an example on how to resize the image to 150 pixels in width:

Source https://stackoverflow.com/questions/67920231

QUESTION

Issues with Sharp in Azure functions

Asked 2021-Jun-09 at 02:46

Hi I have been trying to deploy my code for resizing image streams in azure function. It seems to be working perfectly fine in local, even deployment via VS code is successful. But when I try to trigger the function, I get below exception.

Relatively new to both nodejs and azure, any suggestions?

...

ANSWER

Answered 2021-Jun-09 at 02:46

According to the error message, we need to update Azure function as 64 bit Platform. Regarding how to do that, please refer to here.

Source https://stackoverflow.com/questions/67881736

QUESTION

How to properly render images using a map function with Gatsby.js

Asked 2021-Jun-08 at 05:16

This app was originally built using react, however we have decided to convert everything over and use Gatsbyjs. I am new to Gatsby and I am trying to get my images to render correctly using the artist data. Here is how this part of the data was originally built:

...

ANSWER

Answered 2021-Jun-08 at 05:16

Your data, when using page queries, is always under props.data so your nesting should look like:

Source https://stackoverflow.com/questions/67877522

QUESTION

How do you test if an attribute exists in a dynamic JSON file

Asked 2021-Jun-07 at 16:59

The code below shows how I'm reading / deserializing a geoJSON file into an ExpandoObject using Newtonsoft.Json.

As I'm looping through the items how do I test if the item contains the attribute place?

Or can I do this in a LINQ query?

As can be seen I've tried several methods from this page none are working

...

ANSWER

Answered 2021-Jun-07 at 16:53

Newtonsoft returns a JObject when DeserializeObject method is called.

Source https://stackoverflow.com/questions/67838251

QUESTION

Failed to deploy Cloud Functions after upgrading to node 14

Asked 2021-Jun-07 at 13:13

After bumping the node version on my Firebase project from node 10 to node 14 in my package.json, like so:

...

ANSWER

Answered 2021-Jun-07 at 13:13

After looking at the Cloud Build from the Google Cloud Console, I've noticed that the following error:

2021-06-07T03:28:00.714478581ZStep #4 - "builder": src/cloud_functions/userInfo/https/onCall/uploadAvatar.ts(4,19): error TS7016: Could not find a declaration file for module 'sharp'. '/workspace/node_modules/sharp/lib/index.js' implicitly has an 'any' type.

To fix this, I simply added the following code in the tsconfig.json:

Source https://stackoverflow.com/questions/67855547

QUESTION

C# Make one expression tree into two (or two new expression trees with divided logic)

Asked 2021-Jun-07 at 12:14

This question was already answer in the opposite way here, but reverting the logic is easier said than done.

So let me give you a very concrete example:

I have this :

e => e.Description == "sum" && e.Summary == "asd"

i want to split this to:

e => e.Description == "sum"
e => e.Summary == "asd"

In practical, linq way, i want to archieve this:

...

ANSWER

Answered 2021-Jun-07 at 12:14

Well without additional type checking:

Source https://stackoverflow.com/questions/67870940

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install SHARP

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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