pcgr | Personal Cancer Genome Reporter | Genomics library

by sigven R Version: v1.4.1 License: MIT

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | pcgr Summary

pcgr is a R library typically used in Artificial Intelligence, Genomics applications. pcgr has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

The Personal Cancer Genome Reporter (PCGR) is a stand-alone software package for translation of individual tumor genomes for precision cancer medicine.

Support

Quality

Security

License

Reuse

Support

pcgr has a low active ecosystem.

It has 223 star(s) with 48 fork(s). There are 22 watchers for this library.

It had no major release in the last 12 months.

There are 10 open issues and 125 have been closed. On average issues are closed in 114 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pcgr is v1.4.1

Quality

pcgr has no bugs reported.

Security

pcgr has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

pcgr is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pcgr releases are available to install and integrate.

Installation instructions are available. Examples and code snippets are not available.

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pcgr Key Features

No Key Features are available at this moment for pcgr.

pcgr Examples and Code Snippets

No Code Snippets are available at this moment for pcgr.

Community Discussions

Trending Discussions on pcgr

Subset a dataframe with specific condition in R

Activate conda environment on execution of Singularity container in Nextflow

New blogdown posts showing on R-Studio, not rendering on Netlify? How to debug?

QUESTION

Subset a dataframe with specific condition in R

Asked 2021-Mar-07 at 18:10

hello I have this df

...

ANSWER

Answered 2021-Mar-07 at 18:10

why not we are simply doing this?

Source https://stackoverflow.com/questions/66507800

QUESTION

Activate conda environment on execution of Singularity container in Nextflow

Asked 2020-Feb-08 at 01:28

I am using Singularity containers to run commands from Nextflow workflow management system. I have a conda environment inside Singularity which I can activate when I shell into the container

...

ANSWER

Answered 2019-Jun-07 at 07:45

The shell in singularity runs in a special environment, so the standard conda modifications to the .bashrc do not work. Instead, you need to modify the $SINGULARITY_ENVIRONMENT variable. Something along these lines in your Singularity definition file should work:

Source https://stackoverflow.com/questions/56446195

QUESTION

New blogdown posts showing on R-Studio, not rendering on Netlify? How to debug?

Asked 2018-Sep-24 at 10:06

I've added a couple of blogposts to my blogdown/netlify backed site today:

https://github.com/brainstorm/brainblog/blob/master/content/brainstorm/2018-03-12-umccr-arteria.md

https://github.com/brainstorm/brainblog/blob/master/content/brainstorm/2018-03-13-umccr-pcgr.md

And while they render/preview successfully on R-Studio:

Those two blogposts do not show up on Netlify-hosted site after pushing/deploying (see deploy log below). *Even a manual deploy triggering (with clear cache checkbox on), fails to update the index page accordingly to show the two new posts:

From Netlify's side, this is a successful deployment, along with all previous pushes from github, as far as I can see from their web console:

...

ANSWER

Answered 2018-Mar-13 at 00:40

Apparently after re-triggering a deploy today, one of the posts showed up, which leads me to believe that this is a timezone difference issue.

A consequence of Australia living in the future compared with the rest of the world X"D

Source https://stackoverflow.com/questions/49228701

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pcgr

Installation instructions
Run through an example
Learn more about Details regarding PCGR input files, and how they should be formatted Configuration of key settings The types and contents of PCGR output files The variant tier system implemented in PCGR The list of gene and variant annotation resources used in PCGR annotation
Frequenty asked questions (FAQ)

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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