entrez | gem for HTTP requests to Entrez E-utilities | HTTP library

by ordinaryzelig Ruby Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | entrez Summary

entrez is a Ruby library typically used in Networking, HTTP applications. entrez has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

gem for HTTP requests to Entrez E-utilities

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Quality

Security

License

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Support

entrez has a low active ecosystem.

It has 8 star(s) with 6 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 1 have been closed. On average issues are closed in 6 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of entrez is current.

Quality

entrez has no bugs reported.

Security

entrez has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

entrez is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

entrez releases are not available. You will need to build from source code and install.

Top functions reviewed by kandi - BETA

kandi has reviewed entrez and discovered the below as its top functions. This is intended to give you an instant insight into entrez implemented functionality, and help decide if they suit your requirements.

Sends the maximum number of requests to sleep for the maximum time limit
Returns the id from the server
Indicates whether the limit should be ignored .
returns true if there is a request

Get all kandi verified functions for this library.

entrez Key Features

No Key Features are available at this moment for entrez.

entrez Examples and Code Snippets

No Code Snippets are available at this moment for entrez.

Community Discussions

Trending Discussions on entrez

Parsing XML object in python 3.9

Learn structure of XML file in preparation for CSV or RDF conversion

How can i fix Syntax error, ";" expected but "ELSE" found

How to prevent axios.interceptors.response.use to crash the error handling?

How to add a suffix (like measure units cm, m, km, etc) at the end of a float in my list?

Bash while loop: Preventing third-party commands to read from stdin

Type 'ReadCitee' is not a subtype of type 'String'

Multiple prints in the same lines(cards)

Difference between two dates in Pascal

Search and replace string between tags

QUESTION

Parsing XML object in python 3.9

Asked 2021-Jun-08 at 20:04

I'm trying to get some data using the NCBI API. I am using requests to make the connection to the API.

What I'm stuck on is how do I convert the XML object that requests returns into something that I can parse?

Here's my code for the function so far:

...

ANSWER

Answered 2021-Jun-08 at 20:04

You would use something like BeautifulSoup for this ('this' being 'convert and parse the xml object').

What you are calling your xml object is still the response object, and you need to extract the content from that object first.

Source https://stackoverflow.com/questions/67893836

QUESTION

Learn structure of XML file in preparation for CSV or RDF conversion

Asked 2021-Jun-06 at 17:58

I would like to convert NCBI's Biosample Metadata XML file to CSV, or RDF/XML as a second choice. To do that, I believe I have to learn more about the structure of this file. I can run basic XQueries in BaseX*, like just listing all values, but then I've been using shell tools like sort|uniq -c to count them. I have heard about XSLT transformations and GRDDL in passing, but I don't think a style sheet is provided for this XML document, and I don't know how to create or discover one.

For example, can I get a count of the number of s for each ? Are there any with more than one primary ? What are the most common db attributes of the primary Ids?

Here's a query that shows my maximum level of XQuery sophistication at this point:

...

ANSWER

Answered 2021-Jun-06 at 17:58

similar to my answer for https://www.biostars.org/p/280581/ using my tool xsltstream:

Source https://stackoverflow.com/questions/67850041

QUESTION

How can i fix Syntax error, ";" expected but "ELSE" found

Asked 2021-Jun-05 at 20:38

hi i want to run this code but it show me several errors please any one can help

...

ANSWER

Answered 2021-Jun-05 at 20:38

Pascal expects one statement between then and else, and a statement does not ends with a ;. ; is used as a separator of statements in compound statment.

To get rid of your errors do one of:

Remove ; at the end of the Writeln('c est glacial ') and Writeln('le temps est doux')
or use compound statements: write then begin and end else instead of just then and else.

Also after the last Writeln there should be ; instead of :.

Source https://stackoverflow.com/questions/67853691

QUESTION

How to prevent axios.interceptors.response.use to crash the error handling?

Asked 2021-May-30 at 08:47

I have several forms "Login, Registration, Create a product..." For these forms, I was handling errors with useState for the front end and for the back end with express-validator.

Everything worked perfectly, I received error messages as expected.

But now, I realize that none of these forms manage errors anymore. Since I set up my "axios.interceptors.response.use" to send the user back to the login page if he has a 403 status (This is my way of handling a token that expires).

Here is my code that NORMALLY shows me the errors : (For example, this is my login page where I only get one error message)

...

ANSWER

Answered 2021-May-30 at 08:47

You've missed one thing, to return the error from axios response interceptor when error.response.status is not 403

Source https://stackoverflow.com/questions/67755260

QUESTION

How to add a suffix (like measure units cm, m, km, etc) at the end of a float in my list?

Asked 2021-May-29 at 08:59

I have to make a program that will allow the user to save people's personal information like their last names, first names, genders, heights and so on... I am not allowed to use dictionaries so no use in recommending it.

I don't know how to add the suffix "cm" when I print the person's height. Here is my code that request height input:

starting line 68

...

ANSWER

Answered 2021-May-29 at 08:57

while not isTailleValid:
    taille = input("Taille invalide, entrez bien une valeur entre 0 et 250 :\n").strip()
    isTailleValid = validation_taille(taille)
personInf[Personne_taille] = taille + "cm"

Source https://stackoverflow.com/questions/67749511

QUESTION

Bash while loop: Preventing third-party commands to read from stdin

Asked 2021-May-12 at 16:24

Assume an input table (intable.csv) that contains ID numbers in its second column, and a fresh output table (outlist.csv) into which the input file - extended by one column - is to be written line by line.

...

ANSWER

Answered 2021-May-06 at 18:32

This would happen if esearch reads from standard input. It will inherit the input redirection from the while loop, so it will consume the rest of the input file.

The solution is to redirect is standard input elsewhere, e.g. /dev/null.

Source https://stackoverflow.com/questions/67423965

QUESTION

Type 'ReadCitee' is not a subtype of type 'String'

Asked 2021-May-10 at 00:24

I have a little problem. I try to add the results of my database in a dynamic list but I get the error message "type 'ReadCitee' is not a subtype of type 'String' ". I tried to return an object of type String in my "READCITEE" class but this one only wants to return objects of type widgets. I have been stuck for several days. Thank you for the help in advance.

My class PageVille:

...

ANSWER

Answered 2021-May-10 at 00:24

In the build method of _PageVileeState, there is the following code:

Source https://stackoverflow.com/questions/67463219

QUESTION

Multiple prints in the same lines(cards)

Asked 2021-May-03 at 19:39

import random
cartes = [2, 3, 4, 5, 6, 7, 8, 9, 10, 10, 10, 10, 11] * 4
joueurs = []
random.shuffle(cartes)
nb = int(input("Entrez le nombre de joueurs:"))
def carte(valeur, nombre):
    if int(nombre) < 10:
        print(" __________________")
        print("|                  |")
        print("|  {0}            {0}  |".format(nombre))
        print("|                  |")
        print("|                  |")
        print("|                  |")
        print("|        {0}         |".format(valeur))
        print("|                  |")
        print("|                  |")
        print("|                  |")
        print("| {0}             {0}  |".format(nombre))
        print("|__________________|")
    if int(nombre) > 9:
        print(" __________________")
        print("|                  |")
        print("|  {0}          {0}  |".format(nombre))
        print("|                  |")
        print("|                  |")
        print("|                  |")
        print("|        {0}        |".format(valeur))
        print("|                  |")
        print("|                  |")
        print("|                  |")
        print("| {0}           {0}  |".format(nombre))
        print("|__________________|")


def distribution():
    for i in range(nb):
        joueurs.append([])
        joueurs[i].append(cartes[i])
        joueurs[i].append(cartes[i + nb + 1])
        print("main du joueur", i + 1, ":", joueurs[i])
        carte(str(cartes[i]), str(cartes[i]))
        carte(str(cartes[i+1]), str(cartes[i+nb+1]))

distribution()

...

ANSWER

Answered 2021-May-03 at 18:15

Firstly I would drop explicit .format and replace with f in front of string with {} this way you can easily input stuff.

Secondly I would craft """ """ multiple line string instead of many " " this way you could craft string with two cards next to each other.

I can't comment so I will edit answer. Yes like you did with additional parameter

Source https://stackoverflow.com/questions/67373456

QUESTION

Difference between two dates in Pascal

Asked 2021-Apr-17 at 12:54

This program is supposed to find the difference between two dates but it has a bug and I can't find it. It keeps returning a big number - please help

...

ANSWER

Answered 2021-Feb-14 at 22:51

I think the error was somewhere in s and x (x:=s-x; etc.), I did refactoring:

Source https://stackoverflow.com/questions/66193997

QUESTION

Search and replace string between tags

Asked 2021-Apr-15 at 09:43

I have the following document with 100,000 lines. In this document I have some translations in different languages, My problem is that I need to have "en_US" and "en" to be exactly the same (text between the tags). I trief using SED, AWK, TR but I´m not able to achieve my target and not affect other languages. Any IDEAS?

...

ANSWER

Answered 2021-Apr-14 at 23:59

Does en_US always come first?

Source https://stackoverflow.com/questions/67100099

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install entrez

You can download it from GitHub.
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Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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