CoverM | Read coverage calculator for metagenomics | Genomics library

 by   wwood Rust Version: v0.6.1 License: GPL-3.0

kandi X-RAY | CoverM Summary

kandi X-RAY | CoverM Summary

CoverM is a Rust library typically used in Artificial Intelligence, Genomics applications. CoverM has no vulnerabilities, it has a Strong Copyleft License and it has low support. However CoverM has 5 bugs. You can download it from GitHub.

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications. CoverM calculates coverage of genomes/MAGs coverm genome (help) or individual contigs coverm contig (help). Calculating coverage by read mapping, its input can either be BAM files sorted by reference, or raw reads and reference genomes in various formats.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              CoverM has a low active ecosystem.
              It has 125 star(s) with 14 fork(s). There are 8 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 21 open issues and 51 have been closed. On average issues are closed in 19 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of CoverM is v0.6.1

            kandi-Quality Quality

              CoverM has 5 bugs (0 blocker, 0 critical, 5 major, 0 minor) and 104 code smells.

            kandi-Security Security

              CoverM has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              CoverM code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              CoverM is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              CoverM releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.
              It has 1746 lines of code, 0 functions and 5 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of CoverM
            Get all kandi verified functions for this library.

            CoverM Key Features

            No Key Features are available at this moment for CoverM.

            CoverM Examples and Code Snippets

            No Code Snippets are available at this moment for CoverM.

            Community Discussions

            QUESTION

            Cloudflare Workers - changes are not visible on live (but are in preview)
            Asked 2021-Aug-31 at 17:48

            Hello and thank you for your help. Sadly support over at CF does not think they need to help me.

            I am learning to use workers, and have written a simple HTML injector just to see it working on my site.

            this is the full worker code i have:

            ...

            ANSWER

            Answered 2021-Aug-31 at 17:48

            I believe the problem here is that you've configured your routes to match "נר-בינוני" unescaped, but the browser will actually percent-encode the URL before sending to the server, therefore the route matching actually operates on percent-escaped URLs. So the actual URL is https://coverme.co.il/product/%D7%A0%D7%A8-%D7%91%D7%99%D7%A0%D7%95%D7%A0%D7%99-tuberosejasmine/, and this does not match your route because %D7%A0%D7%A8-%D7%91%D7%99%D7%A0%D7%95%D7%A0%D7%99 is not considered to be the same as נר-בינוני.

            EDIT: Unfortunately, using percent-encoding in your route pattern won't fix the problem, due to a known bug. Unfortunately, it's just not possible to match non-ASCII characters in a Workers route today. We intend to fix this, but it's hard because some sites are accidentally dependent on the broken behavior, so the fix would break them.

            What you can potentially do instead is match against coverme.co.il/product/*, and then, inside your worker, check if the path also has נר-בינוני-tuberosejasmine. If it does not, then your fetch event handler should simply return without calling event.respondWith(). This will trigger "default handling" of the request, meaning it will pass through and be sent to your origin server like normal. (Note that you will still be billed for a Workers request, though.)

            So, something like this:

            Source https://stackoverflow.com/questions/68979276

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install CoverM

            CoverM and its dependencies can be installed through the bioconda conda channel. After initial setup of conda and the bioconda channel, it can be installed with.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/wwood/CoverM.git

          • CLI

            gh repo clone wwood/CoverM

          • sshUrl

            git@github.com:wwood/CoverM.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link