copycat | simple script to capture and bin the read coverage | Genomics library
kandi X-RAY | copycat Summary
kandi X-RAY | copycat Summary
Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtools to get coverage for each individual nucleotide in the genome using bedtools genomecov, then bins and organizes these coverage values into 10kb bins and outputs the coverage information in a .csv format (for upload to SplitThreader) and in a .seg format (for viewing the copy number profile in IGV). Usage: copycat alignments.sorted.bam genome_file output_prefix.
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Trending Discussions on copycat
QUESTION
I'm really not that good in Powershell and only get along with a lot of Google research.
I have a CSV File and in column 1 are a bunch of words.
For Example:
...ANSWER
Answered 2021-May-04 at 15:25If your input csv (the one with just one column) has a header above the values, read it with
QUESTION
I am new to prolog and I'm having trouble with this problem. I am taking a sentence as input and put [Anne,do,you,know] in front of the sentence and replace any occurrence of you to I.
For example copycat([you,love,me], X) will return X = [Anne,do,you,know,i,love,you].
...ANSWER
Answered 2021-Mar-10 at 09:17First of all, you need to break this in two parts, since you want to replace every suitable element of the list by something, but you only want to add [Anne, do,you,know] once.
So you could define your predicate like this:
QUESTION
import sys
from PyQt5 import QtCore
from PyQt5 import QtWidgets
from PyQt5.QtWidgets import QMainWindow, QApplication, QPlainTextEdit, QApplication, QMainWindow, QLabel, QComboBox
from PyQt5.QtGui import QPixmap
from pynput import keyboard
from pynput.keyboard import Listener, Controller
import pyperclip as pc
keyboard = Controller()
class App(QMainWindow):
def __init__(self, parent=None):
super(App, self).__init__(parent)
#super().__init__()
label = QLabel(self)
pixmap = QPixmap('E:/copycat/new.png')
label.setPixmap(pixmap)
label.setGeometry(0,0,900,400)
self.title = 'COPYCAT'
self.left = 10
self.top = 10
self.width = 400
self.height = 140
self.initUI()
self.key()
def initUI(self):
self.setWindowTitle(self.title)
self.setGeometry(self.left, self.top, self.width, self.height)
###########
combo = QComboBox(self)
shotcut_list = ["Key.f9","Key.f2","Key.f3","Key.f4","Key.f5","Key.f6","Key.f7","Key.f8","Key.f1","Key.f10","Key.f11","Key.f12"]
combo.addItems(shotcut_list)
global shortcut
global cptext
shortcut = combo.currentText()
combo.setGeometry(350, 120, 120, 30)
combo.activated[str].connect(self.onChanged)
# Create textbox
self.textbox = QPlainTextEdit(self)
self.textbox.move(20, 160)
self.textbox.setReadOnly(True)
self.textbox.resize(500,205)
self.setGeometry(70,70,540,388)
self.show()
def onChanged(self, text):
global shortcut
shortcut=text
def print_key(self,key):
if str(key) == shortcut:
cptext = pc.paste()
keyboard.type(cptext)
self.textbox.insertPlainText(cptext)
self.textbox.insertPlainText("\n")
def key(self):
listener = Listener(on_press=self.print_key)
listener.start()
if __name__ == '__main__':
app = QtWidgets.QApplication(sys.argv)
ex = App()
#ex.key()
sys.exit(app.exec_())
...ANSWER
Answered 2021-Mar-08 at 11:33The callback associated with on_press is executed in a secondary thread so your implementation is updating the GUI from a secondary thread which Qt prohibits, instead you should use the signals as they are thread-safe.
QUESTION
I am making a copycat Drudge Report website for practice.
While coding, I noticed that the padding doesn’t seem to work on the middle column. There’s no spaces next to the
ANSWER
Answered 2020-Dec-13 at 00:53It looks like HTML/CSS above is using float
CSS property to achieve 3-column layout.
This is old and inefficient way (Flexbox is preferred for columns, Grid for more complex layouts).
The caveat with using float
is that middle-column
should not have width
set to it and should have margin-left
and margin-right
which match left and right column sizes. Here's an example.
QUESTION
My IDE (IntelliJ) warns me about an unchecked conversion:
Unchecked overriding: return type requires unchecked conversion. Found 'com.company.Main.Cat', required 'T'
Nevertheless my code works as expected. Is there something I can do to prevent this warning or does my code have a "design" flaw?
The following MCVE reproduces the warning in public Cat copy()
for Cat
.
ANSWER
Answered 2020-Dec-02 at 14:27Your Animal.copy
method is generic, suggesting that the caller can specify the type of animal they want... but your implementation isn't generic.
So for example, here's a slightly augmented and changed version of your code - note the change to the main
method, which uses just Animal
as the variable type, but specifies a type argument for the copy
method:
QUESTION
I made a form to select skills. After the 1st selection is made, a 2nd list is shown with options depending of the 1st choice. Then, a "+" button allow to duplicate the fields ans add another skill.
My problem :
The inital form is OK but when I press "+" the second form created doesn't work (the second "select field" is not filtered according to the first select.
Please can you help?
Thanks a lot.
...ANSWER
Answered 2020-Oct-28 at 14:12You cannot use same ids
for different elements so instead of id
i have change that to html attributes i.e :data-id
.Then , when you select any option from select-box only divs which are inside form
should change not others which are added dynamically so use $(this).closest("form")..
to make change inside form htmls . Lastly ,these elements are created dynamically so use $(document).on('change', 'select[name="tpl"]',..
.
Also, your copycat
function is copying entire div so next time if you press +
it will show 2
copy of select and so on .To fix this use $('.copycat form:first')...
.
Demo Code :
QUESTION
i was decoding/deencrypting this code, and the python came looking like This
...ANSWER
Answered 2020-Aug-20 at 03:55This is not a complete answer, but most of your file seems to look correct when it is un-escaped and printed out. For example, simply copy-pasting from your decoded.txt
file into a python REPL and printing it out produces:
QUESTION
I have a file that contains id, year, name of movies, like this:
...ANSWER
Answered 2020-Jul-09 at 10:49No you can never approach that kind of pretty formatting using tabs merely.
Sticking to printf
, you could use %*s
format that specifies space occupation. It requires an extra number argument before the string. A positive number means right-aligned, and negative number means left-aligned. For example:
QUESTION
I'm trying to declare a delegate inline with my data in C# and that doesn't seem to compile. I'm hoping someone can help me (re)structure either my thoughts or my code.
My goal is to create different player types in an online game. Each player type has a strategy they employ. This strategy is employed by calling an inline async function that might call a HTTP REST resource as part of the IQueryable evaluation.
Question:
- What is a maintainable way to configure the code required within the
EvaluateTurn()
delegate for each of theAIPlayer
types?
More player types will be added, and the IQueryable
to be a deferred execution Linq Query against CosmosDB, AzureTable, SQL, in-memory array etc.
ANSWER
Answered 2020-Jun-02 at 14:28A delegate is a type, you need to declare a property of that type:
QUESTION
I am having a really strange error where when I go to run my Discord Bot the console outputs the Error of yeet.addRole(Punished) is not a function
. I cant understand why because I have used addRole()
at the beggining of my code and that one seems to work. Can anybody tell me why this is happening??? The error occurs 9 lines from the bottom.
ANSWER
Answered 2018-Jan-24 at 14:04You're retrieving the user mention with let yeet = message.mentions.users.first();
, you have to retrieve the guild member object in order to call addRole();
So all you have to is simply change:
let yeet = message.mentions.users.first();
to
let yeet = message.mentions.members.first();
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